Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1135 NP_003310 17 4312 NP_597676 17 4312 NP_001243779 17 4312 NP_596869 17 4312 NP_689594 17 4312 XP_005246888 17 4312 XP_006712788 17 4312 XP_006712787 17 4312 XP_006712786 17 4312 XP_006712319 17 4312 XP_006711698 17 4312 NP_001186073 17 4312 NP_001254479 17 4312 NP_597681 17 4312 NP_001182192 16 5631 NP_079171 16 5631 XP_006718038 16 5631 XP_005270222 16 5631>NP_004295 Length = 1620 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 GSKMALQ S Sbjct: 432 GSKMALQSS 440>NP_003310 Length = 26926 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 12844 GIKMAMQRN 12852>NP_597676 Length = 27051 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 12969 GIKMAMQRN 12977>NP_001243779 Length = 34350 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 20268 GIKMAMQRN 20276>NP_596869 Length = 33423 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 19341 GIKMAMQRN 19349>NP_689594 Length = 3549 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA++RS Sbjct: 2262 GLKMAMERS 2270>XP_005246888 Length = 22663 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 8581 GIKMAMQRN 8589>XP_006712788 Length = 24022 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 9940 GIKMAMQRN 9948>XP_006712787 Length = 33978 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 19896 GIKMAMQRN 19904>XP_006712786 Length = 35484 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 21402 GIKMAMQRN 21410>XP_006712319 Length = 3308 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA++RS Sbjct: 2021 GLKMAMERS 2029>XP_006711698 Length = 846 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GSKMALQR 8 GS++ALQR Sbjct: 702 GSQLALQR 709>NP_001186073 Length = 3327 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA++RS Sbjct: 2040 GLKMAMERS 2048>NP_001254479 Length = 35991 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 21909 GIKMAMQRN 21917>NP_597681 Length = 27118 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GSKMALQRS 9 G KMA+QR+ Sbjct: 13036 GIKMAMQRN 13044>NP_001182192 Length = 1033 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GSKMALQRS 9 G K ALQRS Sbjct: 456 GEKGALQRS 464>NP_079171 Length = 517 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GSKMALQRS 9 G K ALQRS Sbjct: 456 GEKGALQRS 464>XP_006718038 Length = 537 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GSKMALQRS 9 G K ALQRS Sbjct: 456 GEKGALQRS 464>XP_005270222 Length = 561 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GSKMALQRS 9 G K ALQRS Sbjct: 456 GEKGALQRS 464Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.115 0.278 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 368,007 Number of extensions: 501 Number of successful extensions: 19 Number of sequences better than 10000.0: 19 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 19 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |