Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_003961004 18 1935 XP_005276139 18 1935 NP_001230891 18 1935 NP_002115 16 5631 NP_002112 16 5631 NP_653252 16 5631 XP_005251225 16 5631 XP_006716483 16 5631 XP_005251224 16 5631 NP_001230894 16 5631 NP_036440 16 7355 NP_060868 16 7355 NP_001243334 16 7355 XP_006718544 16 7355 XP_006718543 16 7355 XP_006718542 16 7355 XP_005265375 16 7355 NP_006246 15 9605>XP_003961004 Length = 293 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 GSFRAVTL 8 G FRAVTL Sbjct: 109 GEFRAVTL 116>XP_005276139 Length = 313 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 GSFRAVTL 8 G FRAVTL Sbjct: 109 GEFRAVTL 116>NP_001230891 Length = 261 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 GSFRAVTL 8 G FRAVTL Sbjct: 77 GEFRAVTL 84>NP_002115 Length = 266 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSFRAVT 7 G FRAVT Sbjct: 74 GEFRAVT 80>NP_002112 Length = 258 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSFRAVT 7 G FRAVT Sbjct: 72 GEFRAVT 78>NP_653252 Length = 1463 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSFRAVT 7 G FRAVT Sbjct: 1306 GQFRAVT 1312>XP_005251225 Length = 848 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSFRAVT 7 G FRAVT Sbjct: 691 GQFRAVT 697>XP_006716483 Length = 1367 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSFRAVT 7 G FRAVT Sbjct: 1210 GQFRAVT 1216>XP_005251224 Length = 1439 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSFRAVT 7 G FRAVT Sbjct: 1282 GQFRAVT 1288>NP_001230894 Length = 266 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GSFRAVT 7 G FRAVT Sbjct: 74 GEFRAVT 80>NP_036440 Length = 1162 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSFRAVTLQ 9 GS+ VTLQ Sbjct: 796 GSYLTVTLQ 804>NP_060868 Length = 1091 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GSFRAVTL 8 GSF+ +TL Sbjct: 893 GSFKRITL 900>NP_001243334 Length = 723 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSFRAVTLQ 9 GS+ VTLQ Sbjct: 357 GSYLTVTLQ 365>XP_006718544 Length = 1056 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSFRAVTLQ 9 GS+ VTLQ Sbjct: 690 GSYLTVTLQ 698>XP_006718543 Length = 1067 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSFRAVTLQ 9 GS+ VTLQ Sbjct: 701 GSYLTVTLQ 709>XP_006718542 Length = 1145 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GSFRAVTLQ 9 GS+ VTLQ Sbjct: 779 GSYLTVTLQ 787>XP_005265375 Length = 1085 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GSFRAVTL 8 GSF+ +TL Sbjct: 887 GSFKRITL 894>NP_006246 Length = 683 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GSFRAVTLQ 9 GSF TLQ Sbjct: 138 GSFTEATLQ 146Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.134 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 309,744 Number of extensions: 473 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |