Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 17 2528 XP_006716142 17 2528 XP_005250088 17 2528 XP_006716141 17 2528 XP_005250085 17 2528 XP_006716140 17 2528 XP_005250084 17 2528 XP_005250083 17 2528 XP_005250082 17 2528 NP_055062 16 5631 XP_006714485 16 5631 XP_005263418 16 5631 XP_005263417 16 5631 XP_006714484 16 5631 XP_005263416 16 5631 XP_006714483 16 5631 XP_005263415 16 5631 NP_612395 16 7355 NP_001122403 16 7355 NP_004594 16 7355 NP_001159375 16 7355 XP_005250609 16 7355 XP_006714477 16 7355 NP_001167532 15 9605 NP_057417 15 9605 NP_963863 15 9605 XP_005255284 15 9605 XP_005255283 15 9605 XP_006720936 15 9605 XP_006720935 15 9605 XP_005255282 15 9605 XP_006715411 15 9605 XP_006711741 15 9605 XP_005245713 15 9605 XP_005245712 15 9605 XP_005245710 15 9605 XP_005245711 15 9605 XP_006711739 15 9605 XP_005245709 15 9605 XP_006711737 15 9605 XP_005245706 15 9605 XP_005245705 15 9605 XP_005245704 15 9605 NP_542781 15 9605 NP_000979 15 9605 NP_116193 15 9605>NP_733751 Length = 4911 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 908 GRSKLKS 914>XP_006716142 Length = 4927 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 909 GRSKLKS 915>XP_005250088 Length = 4928 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 909 GRSKLKS 915>XP_006716141 Length = 4959 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 909 GRSKLKS 915>XP_005250085 Length = 4979 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 909 GRSKLKS 915>XP_006716140 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 909 GRSKLKS 915>XP_005250084 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 909 GRSKLKS 915>XP_005250083 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 908 GRSKLKS 914>XP_005250082 Length = 4983 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 1 GRSKLKS 7 GRSKLKS Sbjct: 909 GRSKLKS 915>NP_055062 Length = 1499 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GR+KLK ++ Sbjct: 529 GRNKLKKIL 537>XP_006714485 Length = 1585 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GR+KLK ++ Sbjct: 574 GRNKLKKIL 582>XP_005263418 Length = 1654 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GR+KLK ++ Sbjct: 684 GRNKLKKIL 692>XP_005263417 Length = 1660 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GR+KLK ++ Sbjct: 690 GRNKLKKIL 698>XP_006714484 Length = 1685 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GR+KLK ++ Sbjct: 690 GRNKLKKIL 698>XP_005263416 Length = 1693 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GR+KLK ++ Sbjct: 690 GRNKLKKIL 698>XP_006714483 Length = 1695 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GR+KLK ++ Sbjct: 684 GRNKLKKIL 692>XP_005263415 Length = 1701 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GR+KLK ++ Sbjct: 690 GRNKLKKIL 698>NP_612395 Length = 494 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GRSKLKS 7 GR KLKS Sbjct: 333 GRKKLKS 339>NP_001122403 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GRSKLKS 7 GR KLKS Sbjct: 333 GRKKLKS 339>NP_004594 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RSKLKSL 8 RSKLKS+ Sbjct: 90 RSKLKSI 96>NP_001159375 Length = 251 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RSKLKSL 8 RSKLKS+ Sbjct: 90 RSKLKSI 96>XP_005250609 Length = 280 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RSKLKSL 8 RSKLKS+ Sbjct: 90 RSKLKSI 96>XP_006714477 Length = 364 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GRSKLKS 7 GR KLKS Sbjct: 333 GRKKLKS 339>NP_001167532 Length = 1145 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 918 GRSLFKSLL 926>NP_057417 Length = 2752 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GRS+ +SL+ Sbjct: 700 GRSRSRSLV 708>NP_963863 Length = 1178 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 914 GRSLFKSLL 922>XP_005255284 Length = 2581 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GRS+ +SL+ Sbjct: 700 GRSRSRSLV 708>XP_005255283 Length = 2751 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GRS+ +SL+ Sbjct: 700 GRSRSRSLV 708>XP_006720936 Length = 2751 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GRS+ +SL+ Sbjct: 699 GRSRSRSLV 707>XP_006720935 Length = 2752 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GRS+ +SL+ Sbjct: 700 GRSRSRSLV 708>XP_005255282 Length = 2752 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRSKLKSLI 9 GRS+ +SL+ Sbjct: 700 GRSRSRSLV 708>XP_006715411 Length = 166 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GRSKLKSL 8 GRS+ KSL Sbjct: 83 GRSRSKSL 90>XP_006711741 Length = 1141 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 914 GRSLFKSLL 922>XP_005245713 Length = 1169 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 942 GRSLFKSLL 950>XP_005245712 Length = 1169 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 942 GRSLFKSLL 950>XP_005245710 Length = 1169 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 942 GRSLFKSLL 950>XP_005245711 Length = 1169 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 942 GRSLFKSLL 950>XP_006711739 Length = 1170 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 943 GRSLFKSLL 951>XP_005245709 Length = 1187 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 960 GRSLFKSLL 968>XP_006711737 Length = 1193 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 966 GRSLFKSLL 974>XP_005245706 Length = 1216 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 989 GRSLFKSLL 997>XP_005245705 Length = 1216 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 989 GRSLFKSLL 997>XP_005245704 Length = 1239 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRSKLKSLI 9 GRS KSL+ Sbjct: 1012 GRSLFKSLL 1020>NP_542781 Length = 261 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GRSKLKSL 8 GRS+ KSL Sbjct: 178 GRSRSKSL 185>NP_000979 Length = 136 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RSKLKSLI 9 RSK+KS + Sbjct: 65 RSKIKSFV 72>NP_116193 Length = 270 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SKLKSLI 9 SKLKSL+ Sbjct: 52 SKLKSLL 58Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.135 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 377,039 Number of extensions: 519 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |