Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003290 19 665 NP_001273001 17 4312 NP_001123551 17 4312 NP_004332 17 4312 NP_005552 17 4312 NP_066014 17 4312 XP_005264615 17 4312 XP_006712164 17 4312 XP_005264614 17 4312 XP_005264613 17 4312 XP_005264612 17 4312 XP_006710707 17 4312 XP_005270926 17 4312 XP_005270927 17 4312 XP_005270925 17 4312 NP_001257933 16 5631 NP_001827 16 7355 NP_570913 16 7355 NP_001230122 16 7355 NP_057667 16 7355 NP_001193698 16 7355 NP_001136171 16 7355 NP_001136172 16 7355 XP_006718503 16 7355 XP_006718502 16 7355 XP_005273868 16 7355 XP_006718501 16 7355 XP_005273867 16 7355 XP_005273866 16 7355 XP_005273864 16 7355 XP_005273863 16 7355 XP_005273862 16 7355 NP_001355 16 7355 NP_055628 15 9605 NP_694985 15 9605 NP_006738 15 9605 NP_001157576 15 9605 NP_001157577 15 9605 NP_061868 15 9605 NP_997273 15 9605 XP_005261981 15 9605 XP_006724481 15 9605 XP_005261980 15 9605 XP_005274246 15 9605 NP_001191047 15 9605>NP_003290 Length = 803 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMTITLV 9 GRG TITLV Sbjct: 242 GRGTTITLV 250>NP_001273001 Length = 947 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+TLV Sbjct: 471 GTGKTVTLV 479>NP_001123551 Length = 1003 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+TLV Sbjct: 527 GTGKTVTLV 535>NP_004332 Length = 2225 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 GMTIT+V Sbjct: 2072 GMTITMV 2078>NP_005552 Length = 417 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GRGMTITL 8 GRG T+TL Sbjct: 95 GRGHTLTL 102>NP_066014 Length = 1003 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+TLV Sbjct: 527 GTGKTVTLV 535>XP_005264615 Length = 2162 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 GMTIT+V Sbjct: 2009 GMTITMV 2015>XP_006712164 Length = 2179 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 GMTIT+V Sbjct: 2026 GMTITMV 2032>XP_005264614 Length = 2191 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 GMTIT+V Sbjct: 2038 GMTITMV 2044>XP_005264613 Length = 2208 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 GMTIT+V Sbjct: 2055 GMTITMV 2061>XP_005264612 Length = 2242 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 GMTIT+V Sbjct: 2089 GMTITMV 2095>XP_006710707 Length = 898 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+TLV Sbjct: 527 GTGKTVTLV 535>XP_005270926 Length = 947 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+TLV Sbjct: 471 GTGKTVTLV 479>XP_005270927 Length = 947 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+TLV Sbjct: 471 GTGKTVTLV 479>XP_005270925 Length = 1003 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+TLV Sbjct: 527 GTGKTVTLV 535>NP_001257933 Length = 186 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 GMTITL+ Sbjct: 168 GMTITLL 174>NP_001827 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GRGMTITL 8 GR +T+TL Sbjct: 69 GRSITVTL 76>NP_570913 Length = 256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMTITLV 9 RG+ ITLV Sbjct: 232 RGLDITLV 239>NP_001230122 Length = 256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMTITLV 9 RG+ ITLV Sbjct: 232 RGLDITLV 239>NP_057667 Length = 256 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RGMTITLV 9 RG+ ITLV Sbjct: 232 RGLDITLV 239>NP_001193698 Length = 909 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 528 GAGQTVTII 536>NP_001136171 Length = 975 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 594 GAGQTVTII 602>NP_001136172 Length = 749 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 386 GAGQTVTII 394>XP_006718503 Length = 672 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 528 GAGQTVTII 536>XP_006718502 Length = 743 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 362 GAGQTVTII 370>XP_005273868 Length = 819 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 456 GAGQTVTII 464>XP_006718501 Length = 828 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 447 GAGQTVTII 455>XP_005273867 Length = 837 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 456 GAGQTVTII 464>XP_005273866 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 489 GAGQTVTII 497>XP_005273864 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 509 GAGQTVTII 517>XP_005273863 Length = 890 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 509 GAGQTVTII 517>XP_005273862 Length = 891 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 528 GAGQTVTII 536>NP_001355 Length = 870 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 489 GAGQTVTII 497>NP_055628 Length = 1065 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 RGMTITL 8 RGM +TL Sbjct: 511 RGMNVTL 517>NP_694985 Length = 1042 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMTITL 8 GRG ITL Sbjct: 652 GRGEAITL 659>NP_006738 Length = 1042 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMTITL 8 GRG ITL Sbjct: 652 GRGEAITL 659>NP_001157576 Length = 1165 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 773 GTGKTVTII 781>NP_001157577 Length = 1165 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 753 GTGKTVTII 761>NP_061868 Length = 1211 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 773 GTGKTVTII 781>NP_997273 Length = 306 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 G+T+TL+ Sbjct: 187 GLTVTLI 193>XP_005261981 Length = 970 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 532 GTGKTVTII 540>XP_006724481 Length = 1164 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 726 GTGKTVTII 734>XP_005261980 Length = 1191 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 GRGMTITLV 9 G G T+T++ Sbjct: 753 GTGKTVTII 761>XP_005274246 Length = 1042 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMTITL 8 GRG ITL Sbjct: 652 GRGEAITL 659>NP_001191047 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 GMTITLV 9 G+T+TL+ Sbjct: 187 GLTVTLI 193Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.146 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 451,924 Number of extensions: 681 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |