Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 19 665 XP_006716142 19 665 XP_005250088 19 665 XP_006716141 19 665 XP_005250085 19 665 XP_006716140 19 665 XP_005250084 19 665 XP_005250083 19 665 XP_005250082 19 665 NP_001103132 17 2528 NP_003473 17 3301 XP_006719679 17 3301 XP_005269219 17 3301 XP_006719678 17 3301 XP_006719677 17 3301 NP_061135 17 4312 NP_003613 17 4312 NP_001185845 17 4312 NP_803193 17 4312 NP_001185844 17 4312 XP_006719224 17 4312 XP_006719223 17 4312 XP_006719222 17 4312 XP_005253573 17 4312 XP_005253572 17 4312 XP_005253571 17 4312 XP_005253568 17 4312 XP_005253567 17 4312 XP_005253566 17 4312 XP_005253565 17 4312 XP_005253564 17 4312 XP_005253563 17 4312 XP_005253562 17 4312 XP_006715571 17 4312 XP_003960842 16 5631 XP_003846346 16 5631 XP_003846679 16 5631 NP_663748 16 5631 NP_000662 16 7355 NP_113652 16 7355 XP_005268179 16 7355 XP_005268177 16 7355 XP_006720334 16 7355 XP_006720333 16 7355 XP_005268171 16 7355 XP_006720331 16 7355 XP_006720330 16 7355 XP_006720329 16 7355 XP_005268172 16 7355 XP_006720328 16 7355 NP_996816 15 9605 NP_116206 15 9605 NP_001258867 15 9605 NP_705618 15 9605 NP_004289 15 9605 NP_001006635 15 9605 NP_001401 15 9605 NP_060524 15 9605 NP_085046 15 9605 NP_001265241 15 9605 NP_060735 15 9605 NP_001136041 15 9605 XP_006721123 15 9605 XP_006721122 15 9605 XP_005255471 15 9605 XP_006721121 15 9605 XP_005255470 15 9605 XP_006721120 15 9605 XP_006711508 15 9605>NP_733751 Length = 4911 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 906 GRGRSKLKS 914>XP_006716142 Length = 4927 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 907 GRGRSKLKS 915>XP_005250088 Length = 4928 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 907 GRGRSKLKS 915>XP_006716141 Length = 4959 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 907 GRGRSKLKS 915>XP_005250085 Length = 4979 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 907 GRGRSKLKS 915>XP_006716140 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 907 GRGRSKLKS 915>XP_005250084 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 907 GRGRSKLKS 915>XP_005250083 Length = 4982 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 906 GRGRSKLKS 914>XP_005250082 Length = 4983 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SKLKS Sbjct: 907 GRGRSKLKS 915>NP_001103132 Length = 4284 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG+SKL S Sbjct: 183 GRGVSKLGS 191>NP_003473 Length = 5537 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG ++LKS Sbjct: 1323 GRGRARLKS 1331>XP_006719679 Length = 5536 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG ++LKS Sbjct: 1323 GRGRARLKS 1331>XP_005269219 Length = 5537 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG ++LKS Sbjct: 1323 GRGRARLKS 1331>XP_006719678 Length = 5539 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG ++LKS Sbjct: 1323 GRGRARLKS 1331>XP_006719677 Length = 5540 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG ++LKS Sbjct: 1323 GRGRARLKS 1331>NP_061135 Length = 648 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SK+K+ Sbjct: 84 GRGGSKIKN 92>NP_003613 Length = 1005 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 509 GRGFFKIKS 517>NP_001185845 Length = 980 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 495 GRGFFKIKS 503>NP_803193 Length = 1011 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 526 GRGFFKIKS 534>NP_001185844 Length = 858 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 373 GRGFFKIKS 381>XP_006719224 Length = 991 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 506 GRGFFKIKS 514>XP_006719223 Length = 580 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 540 GRGFFKIKS 548>XP_006719222 Length = 883 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 387 GRGFFKIKS 395>XP_005253573 Length = 991 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 495 GRGFFKIKS 503>XP_005253572 Length = 994 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 498 GRGFFKIKS 506>XP_005253571 Length = 1002 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 506 GRGFFKIKS 514>XP_005253568 Length = 1014 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 529 GRGFFKIKS 537>XP_005253567 Length = 1025 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 540 GRGFFKIKS 548>XP_005253566 Length = 1025 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 529 GRGFFKIKS 537>XP_005253565 Length = 1026 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 530 GRGFFKIKS 538>XP_005253564 Length = 1033 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 537 GRGFFKIKS 545>XP_005253563 Length = 1036 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 540 GRGFFKIKS 548>XP_005253562 Length = 1036 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 GRG K+KS Sbjct: 540 GRGFFKIKS 548>XP_006715571 Length = 628 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 GRG SK+K+ Sbjct: 84 GRGGSKIKN 92>XP_003960842 Length = 161 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 G G SKLK+ Sbjct: 153 GSGQSKLKT 161>XP_003846346 Length = 161 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 G G SKLK+ Sbjct: 153 GSGQSKLKT 161>XP_003846679 Length = 161 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 G G SKLK+ Sbjct: 153 GSGQSKLKT 161>NP_663748 Length = 591 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRGMSKLKS 9 G G SKLK+ Sbjct: 365 GSGQSKLKT 373>NP_000662 Length = 374 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 G G++KLK+ Sbjct: 77 GEGVTKLKA 85>NP_113652 Length = 549 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 529 GVSKLKS 535>XP_005268179 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 295 GVSKLKS 301>XP_005268177 Length = 347 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 327 GVSKLKS 333>XP_006720334 Length = 355 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 297 GVSKLKS 303>XP_006720333 Length = 385 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 327 GVSKLKS 333>XP_005268171 Length = 549 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 529 GVSKLKS 535>XP_006720331 Length = 553 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 529 GVSKLKS 535>XP_006720330 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 497 GVSKLKS 503>XP_006720329 Length = 557 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 499 GVSKLKS 505>XP_005268172 Length = 587 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 529 GVSKLKS 535>XP_006720328 Length = 587 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GMSKLKS 9 G+SKLKS Sbjct: 529 GVSKLKS 535>NP_996816 Length = 5202 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRGMSK 6 GRG+SK Sbjct: 3483 GRGLSK 3488>NP_116206 Length = 728 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRGMSK 6 GRGMS+ Sbjct: 721 GRGMSR 726>NP_001258867 Length = 2845 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GRGMSKLKS 9 GRG LKS Sbjct: 934 GRGRGALKS 942>NP_705618 Length = 1391 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 G+GMS++ S Sbjct: 309 GQGMSRVAS 317>NP_004289 Length = 1332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 G+GMS++ S Sbjct: 250 GQGMSRVAS 258>NP_001006635 Length = 881 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMSKLK 8 G G SKLK Sbjct: 290 GAGASKLK 297>NP_001401 Length = 2778 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GRGMSKLKS 9 GRG LKS Sbjct: 867 GRGRGALKS 875>NP_060524 Length = 803 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMSKLK 8 G G SKLK Sbjct: 290 GAGASKLK 297>NP_085046 Length = 942 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRGMSK 6 GRGMS+ Sbjct: 935 GRGMSR 940>NP_001265241 Length = 1327 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRGMSKLKS 9 G+GMS++ S Sbjct: 309 GQGMSRVAS 317>NP_060735 Length = 677 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRGMSK 6 GRG+SK Sbjct: 591 GRGLSK 596>NP_001136041 Length = 578 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRGMSK 6 GRG+SK Sbjct: 492 GRGLSK 497>XP_006721123 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMSKLK 8 G G SKLK Sbjct: 290 GAGASKLK 297>XP_006721122 Length = 804 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMSKLK 8 G G SKLK Sbjct: 213 GAGASKLK 220>XP_005255471 Length = 840 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMSKLK 8 G G SKLK Sbjct: 290 GAGASKLK 297>XP_006721121 Length = 853 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMSKLK 8 G G SKLK Sbjct: 290 GAGASKLK 297>XP_005255470 Length = 853 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMSKLK 8 G G SKLK Sbjct: 290 GAGASKLK 297>XP_006721120 Length = 880 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GRGMSKLK 8 G G SKLK Sbjct: 289 GAGASKLK 296>XP_006711508 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRGMSK 6 GRG+SK Sbjct: 576 GRGLSK 581Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 494,183 Number of extensions: 729 Number of successful extensions: 69 Number of sequences better than 10000.0: 69 Number of HSP's gapped: 69 Number of HSP's successfully gapped: 69 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |