Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001138389 18 1135 NP_001138390 18 1135 NP_001138386 18 1135 NP_001138387 18 1135 NP_000132 18 1135 NP_075259 18 1135 NP_001138388 18 1135 NP_001138391 18 1135 NP_001138385 18 1135 NP_075418 18 1135 XP_006717776 18 1135 XP_006717775 18 1135 XP_006717774 18 1135 XP_006717773 18 1135 XP_006717772 18 1135 XP_006717771 18 1135 NP_683515 17 3301 NP_057672 16 5631 NP_001265639 16 5631 XP_005268209 16 5631 XP_005268208 16 5631 NP_003805 16 5631 NP_996663 16 7355 XP_005258026 16 7355 NP_055738 15 9605 NP_001265367 15 9605 NP_001073141 15 9605 NP_443134 15 9605 XP_006719840 15 9605>NP_001138389 Length = 705 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_001138390 Length = 704 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_001138386 Length = 709 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_001138387 Length = 707 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_000132 Length = 821 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_075259 Length = 822 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_001138388 Length = 706 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_001138391 Length = 680 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_001138385 Length = 769 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>NP_075418 Length = 732 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 5 GRFICLVVV 13>XP_006717776 Length = 806 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 24 GRFICLVVV 32>XP_006717775 Length = 726 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 24 GRFICLVVV 32>XP_006717774 Length = 752 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 24 GRFICLVVV 32>XP_006717773 Length = 807 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 24 GRFICLVVV 32>XP_006717772 Length = 838 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 24 GRFICLVVV 32>XP_006717771 Length = 839 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI LVVV Sbjct: 24 GRFICLVVV 32>NP_683515 Length = 1235 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRFI+ +VV Sbjct: 539 GRFITAIVV 547>NP_057672 Length = 142 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GRFISLVV 8 GR+ISL++ Sbjct: 7 GRYISLIL 14>NP_001265639 Length = 142 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GRFISLVV 8 GR+ISL++ Sbjct: 7 GRYISLIL 14>XP_005268209 Length = 776 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RFISLVVV 9 RF+ LVVV Sbjct: 257 RFVELVVV 264>XP_005268208 Length = 776 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RFISLVVV 9 RF+ LVVV Sbjct: 257 RFVELVVV 264>NP_003805 Length = 776 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RFISLVVV 9 RF+ LVVV Sbjct: 257 RFVELVVV 264>NP_996663 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRF+ LV++ Sbjct: 12 GRFLLLVIL 20>XP_005258026 Length = 218 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GRFISLVVV 9 GRF+ LV++ Sbjct: 12 GRFLLLVIL 20>NP_055738 Length = 1142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRFISL 6 GRF+SL Sbjct: 939 GRFVSL 944>NP_001265367 Length = 1198 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRFISL 6 GRF+SL Sbjct: 995 GRFVSL 1000>NP_001073141 Length = 1198 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRFISL 6 GRF+SL Sbjct: 995 GRFVSL 1000>NP_443134 Length = 1099 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GRFISLVVV 9 G F+ LVVV Sbjct: 834 GEFMCLVVV 842>XP_006719840 Length = 1080 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GRFISL 6 GRF+SL Sbjct: 877 GRFVSL 882Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.161 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 322,639 Number of extensions: 528 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |