Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001121619 19 665 NP_000258 19 665 NP_001035957 19 665 XP_006721991 19 665 XP_006721990 19 665 XP_006721989 19 665 XP_005258041 19 665 XP_006721988 19 665 XP_006721987 19 665 XP_006721986 19 665 XP_005258040 19 665 XP_006721985 19 665 NP_065861 18 1935 XP_005267973 18 1935 NP_872288 17 4312 NP_872287 17 4312 NP_055791 16 5631 NP_001073932 16 5631 NP_001368 16 5631 NP_006026 16 5631 NP_112592 16 5631 XP_005268287 16 5631 XP_005268286 16 5631 XP_005268285 16 5631 XP_005268284 16 5631 XP_005269228 16 5631 XP_006718966 16 5631 XP_005269704 16 5631 NP_001073379 16 7355 XP_006719697 16 7355 XP_006719696 16 7355 XP_006719695 16 7355 XP_005269238 16 7355 NP_001157745 15 9605 NP_001157871 15 9605 NP_001074010 15 9605 NP_758953 15 9605 NP_001243064 15 9605 NP_001307 15 9605 XP_005254311 15 9605 XP_006720508 15 9605 XP_006720507 15 9605 XP_005254310 15 9605 XP_005254309 15 9605 XP_005254306 15 9605 XP_005254305 15 9605 XP_005254304 15 9605 XP_005254303 15 9605 XP_006720506 15 9605 XP_005254302 15 9605 XP_005254301 15 9605 XP_006720505 15 9605 XP_005254300 15 9605 XP_005267412 15 9605 XP_005267411 15 9605 NP_078799 15 9605>NP_001121619 Length = 593 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>NP_000258 Length = 2818 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>NP_001035957 Length = 2839 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>XP_006721991 Length = 1632 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>XP_006721990 Length = 2823 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>XP_006721989 Length = 2823 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>XP_005258041 Length = 2836 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>XP_006721988 Length = 2846 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>XP_006721987 Length = 2849 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>XP_006721986 Length = 2854 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 13 GQQNTHTKV 21>XP_005258040 Length = 2857 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>XP_006721985 Length = 2867 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 GQQNT TKV Sbjct: 26 GQQNTHTKV 34>NP_065861 Length = 509 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 G+QN +TKV Sbjct: 257 GEQNMMTKV 265>XP_005267973 Length = 537 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 G+QN +TKV Sbjct: 285 GEQNMMTKV 293>NP_872288 Length = 109 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QNTLTKV 9 QNTLTK+ Sbjct: 84 QNTLTKL 90>NP_872287 Length = 109 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 QNTLTKV 9 QNTLTK+ Sbjct: 84 QNTLTKL 90>NP_055791 Length = 1871 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GQQNTLTKV 9 G Q +LTKV Sbjct: 1672 GSQESLTKV 1680>NP_001073932 Length = 4314 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GQQNTLTK 8 GQ NTL K Sbjct: 1071 GQHNTLDK 1078>NP_001368 Length = 4307 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GQQNTLTK 8 GQ NTL K Sbjct: 1071 GQHNTLDK 1078>NP_006026 Length = 1711 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QQNTLTK 8 Q NTLTK Sbjct: 420 QSNTLTK 426>NP_112592 Length = 349 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 G +NTLT++ Sbjct: 86 GLRNTLTRI 94>XP_005268287 Length = 1490 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QQNTLTK 8 Q NTLTK Sbjct: 420 QSNTLTK 426>XP_005268286 Length = 1685 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QQNTLTK 8 Q NTLTK Sbjct: 420 QSNTLTK 426>XP_005268285 Length = 1702 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QQNTLTK 8 Q NTLTK Sbjct: 420 QSNTLTK 426>XP_005268284 Length = 1728 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QQNTLTK 8 Q NTLTK Sbjct: 420 QSNTLTK 426>XP_005269228 Length = 349 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GQQNTLTKV 9 G +NTLT++ Sbjct: 86 GLRNTLTRI 94>XP_006718966 Length = 4300 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GQQNTLTK 8 GQ NTL K Sbjct: 1071 GQHNTLDK 1078>XP_005269704 Length = 1872 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GQQNTLTKV 9 G Q +LTKV Sbjct: 1673 GSQESLTKV 1681>NP_001073379 Length = 1722 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QNTLTKV 9 QN+LTK+ Sbjct: 1068 QNSLTKI 1074>XP_006719697 Length = 1658 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QNTLTKV 9 QN+LTK+ Sbjct: 1004 QNSLTKI 1010>XP_006719696 Length = 1696 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QNTLTKV 9 QN+LTK+ Sbjct: 1004 QNSLTKI 1010>XP_006719695 Length = 1696 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QNTLTKV 9 QN+LTK+ Sbjct: 1004 QNSLTKI 1010>XP_005269238 Length = 1696 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QNTLTKV 9 QN+LTK+ Sbjct: 1004 QNSLTKI 1010>NP_001157745 Length = 3065 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2483 GQKNLLTR 2490>NP_001157871 Length = 793 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 QQNTLTK 8 ++NTLTK Sbjct: 787 EKNTLTK 793>NP_001074010 Length = 2856 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2274 GQKNLLTR 2281>NP_758953 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GQQNTLT 7 GQQ T+T Sbjct: 111 GQQGTIT 117>NP_001243064 Length = 915 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNTLTKV 9 QNTLT + Sbjct: 281 QNTLTSI 287>NP_001307 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNTLTKV 9 QNTLT + Sbjct: 337 QNTLTSI 343>XP_005254311 Length = 1627 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 1045 GQKNLLTR 1052>XP_006720508 Length = 2658 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2076 GQKNLLTR 2083>XP_006720507 Length = 2763 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2181 GQKNLLTR 2188>XP_005254310 Length = 2906 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2324 GQKNLLTR 2331>XP_005254309 Length = 2956 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2374 GQKNLLTR 2381>XP_005254306 Length = 3066 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2484 GQKNLLTR 2491>XP_005254305 Length = 3114 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2532 GQKNLLTR 2539>XP_005254304 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2533 GQKNLLTR 2540>XP_005254303 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2533 GQKNLLTR 2540>XP_006720506 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2533 GQKNLLTR 2540>XP_005254302 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2533 GQKNLLTR 2540>XP_005254301 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2533 GQKNLLTR 2540>XP_006720505 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2533 GQKNLLTR 2540>XP_005254300 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQQNTLTK 8 GQ+N LT+ Sbjct: 2533 GQKNLLTR 2540>XP_005267412 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GQQNTLT 7 GQQ T+T Sbjct: 67 GQQGTIT 73>XP_005267411 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GQQNTLT 7 GQQ T+T Sbjct: 99 GQQGTIT 105>NP_078799 Length = 775 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GQQNTLTKV 9 G+Q TLT + Sbjct: 738 GRQQTLTAI 746Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.302 0.118 0.301 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 420,204 Number of extensions: 680 Number of successful extensions: 56 Number of sequences better than 10000.0: 56 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 56 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |