Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 390 NP_671714 20 390 XP_006715890 20 390 XP_005250160 20 390 XP_005250159 20 390 NP_001034463 18 1935 NP_976035 16 5631 XP_005249548 16 5631 NP_002496 16 7355 NP_056083 16 7355 XP_005247302 16 7355 NP_005459 16 7355 NP_005054 15 9605 NP_075050 15 9605 NP_001137295 15 9605 NP_001120925 15 9605 NP_004394 15 9605 NP_001230633 15 9605 NP_003400 15 9605 NP_001230631 15 9605 XP_005265644 15 9605 XP_006713482 15 9605>NP_005742 Length = 3907 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 QKIETMQF 9 QKIETMQF Sbjct: 676 QKIETMQF 683>NP_671714 Length = 3899 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 QKIETMQF 9 QKIETMQF Sbjct: 676 QKIETMQF 683>XP_006715890 Length = 3860 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 QKIETMQF 9 QKIETMQF Sbjct: 676 QKIETMQF 683>XP_005250160 Length = 3939 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 QKIETMQF 9 QKIETMQF Sbjct: 676 QKIETMQF 683>XP_005250159 Length = 3952 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 QKIETMQF 9 QKIETMQF Sbjct: 676 QKIETMQF 683>NP_001034463 Length = 534 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GQKIETMQ 8 GQK+E+MQ Sbjct: 118 GQKLESMQ 125>NP_976035 Length = 346 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GQKIETMQF 9 G +I+T+QF Sbjct: 132 GTEIDTLQF 140>XP_005249548 Length = 342 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GQKIETMQF 9 G +I+T+QF Sbjct: 132 GTEIDTLQF 140>NP_002496 Length = 347 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GQKIETMQ 8 GQ+++T+Q Sbjct: 46 GQQVQTLQ 53>NP_056083 Length = 2243 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GQKIETMQF 9 G+K ET++F Sbjct: 77 GKKSETLKF 85>XP_005247302 Length = 2248 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GQKIETMQF 9 G+K ET++F Sbjct: 77 GKKSETLKF 85>NP_005459 Length = 740 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQKIETMQ 8 GQ+I T+Q Sbjct: 636 GQRISTLQ 643>NP_005054 Length = 359 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GQKIETM 7 G K+ETM Sbjct: 32 GDKLETM 38>NP_075050 Length = 624 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQKIETMQ 8 GQK+ T+Q Sbjct: 402 GQKMTTLQ 409>NP_001137295 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GQKIETMQ 8 GQ++E+M+ Sbjct: 217 GQEVESME 224>NP_001120925 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QKIETMQ 8 QKI TMQ Sbjct: 160 QKITTMQ 166>NP_004394 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QKIETMQ 8 QKI TMQ Sbjct: 160 QKITTMQ 166>NP_001230633 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GQKIETMQ 8 GQ++E+M+ Sbjct: 217 GQEVESME 224>NP_003400 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GQKIETMQ 8 GQ++E+M+ Sbjct: 217 GQEVESME 224>NP_001230631 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GQKIETMQ 8 GQ++E+M+ Sbjct: 217 GQEVESME 224>XP_005265644 Length = 624 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQKIETMQ 8 GQK+ T+Q Sbjct: 402 GQKMTTLQ 409>XP_006713482 Length = 624 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GQKIETMQ 8 GQK+ T+Q Sbjct: 402 GQKMTTLQ 409Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 417,794 Number of extensions: 769 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |