Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001155973 19 869 NP_055903 19 869 NP_689737 16 5631 NP_001153518 16 5631 NP_001153505 16 5631 XP_005246402 16 5631 XP_006712393 16 5631 XP_005246401 16 5631 NP_055907 15 9605 XP_005255242 15 9605 XP_005255241 15 9605 XP_005255240 15 9605 XP_005255239 15 9605>NP_001155973 Length = 1833 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GNASLASK 8 GNASLASK Sbjct: 787 GNASLASK 794>NP_055903 Length = 1723 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GNASLASK 8 GNASLASK Sbjct: 787 GNASLASK 794>NP_689737 Length = 1265 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NASLASKV 9 N SLASK+ Sbjct: 32 NVSLASKI 39>NP_001153518 Length = 1261 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NASLASKV 9 N SLASK+ Sbjct: 32 NVSLASKI 39>NP_001153505 Length = 1260 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NASLASKV 9 N SLASK+ Sbjct: 32 NVSLASKI 39>XP_005246402 Length = 1265 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NASLASKV 9 N SLASK+ Sbjct: 32 NVSLASKI 39>XP_006712393 Length = 1267 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NASLASKV 9 N SLASK+ Sbjct: 38 NVSLASKI 45>XP_005246401 Length = 1271 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NASLASKV 9 N SLASK+ Sbjct: 38 NVSLASKI 45>NP_055907 Length = 3661 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GNASLASKV 9 GN SLA+++ Sbjct: 1436 GNVSLATRL 1444>XP_005255242 Length = 3609 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GNASLASKV 9 GN SLA+++ Sbjct: 1384 GNVSLATRL 1392>XP_005255241 Length = 3637 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GNASLASKV 9 GN SLA+++ Sbjct: 1384 GNVSLATRL 1392>XP_005255240 Length = 3663 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GNASLASKV 9 GN SLA+++ Sbjct: 1410 GNVSLATRL 1418>XP_005255239 Length = 3689 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GNASLASKV 9 GN SLA+++ Sbjct: 1436 GNVSLATRL 1444Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.295 0.110 0.259 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 271,120 Number of extensions: 295 Number of successful extensions: 13 Number of sequences better than 10000.0: 13 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 13 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |