Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003290 18 1135 XP_005258567 18 1935 NP_789780 18 1935 NP_060960 17 4312 NP_004332 17 4312 XP_005264615 17 4312 XP_006712164 17 4312 XP_005264614 17 4312 XP_005264613 17 4312 XP_005264612 17 4312 NP_001257933 16 5631 NP_038466 16 7355 NP_444295 16 7355 NP_064516 16 7355 NP_038472 16 7355 NP_059509 16 7355 XP_005252005 16 7355 XP_005245405 16 7355 XP_005245404 16 7355 NP_997273 15 9605 NP_001191047 15 9605 NP_001034672 15 9605 NP_001034673 15 9605 NP_036539 15 9605>NP_003290 Length = 803 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G TITLVLK Sbjct: 244 GTTITLVLK 252>XP_005258567 Length = 1036 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 GMT+ L+LK Sbjct: 795 GMTVPLILK 803>NP_789780 Length = 1043 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 GMT+ L+LK Sbjct: 795 GMTVPLILK 803>NP_060960 Length = 951 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GMTITLVL 8 G T+TLVL Sbjct: 705 GFTVTLVL 712>NP_004332 Length = 2225 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 GMTIT+V Sbjct: 2072 GMTITMV 2078>XP_005264615 Length = 2162 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 GMTIT+V Sbjct: 2009 GMTITMV 2015>XP_006712164 Length = 2179 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 GMTIT+V Sbjct: 2026 GMTITMV 2032>XP_005264614 Length = 2191 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 GMTIT+V Sbjct: 2038 GMTITMV 2044>XP_005264613 Length = 2208 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 GMTIT+V Sbjct: 2055 GMTITMV 2061>XP_005264612 Length = 2242 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 GMTIT+V Sbjct: 2089 GMTITMV 2095>NP_001257933 Length = 186 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 GMTITL+ Sbjct: 168 GMTITLL 174>NP_038466 Length = 589 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G+T+ LV+K Sbjct: 99 GLTVHLVIK 107>NP_444295 Length = 561 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G+T+ LV+K Sbjct: 99 GLTVHLVIK 107>NP_064516 Length = 601 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G+T+ LV+K Sbjct: 75 GLTVHLVIK 83>NP_038472 Length = 624 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G+T+ LV+K Sbjct: 95 GLTVHLVIK 103>NP_059509 Length = 655 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G+T+ LV+K Sbjct: 84 GLTVHLVIK 92>XP_005252005 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G+T+ LV+K Sbjct: 99 GLTVHLVIK 107>XP_005245405 Length = 427 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G+T+ LV+K Sbjct: 75 GLTVHLVIK 83>XP_005245404 Length = 565 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 G+T+ LV+K Sbjct: 75 GLTVHLVIK 83>NP_997273 Length = 306 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 G+T+TL+ Sbjct: 187 GLTVTLI 193>NP_001191047 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 GMTITLV 7 G+T+TL+ Sbjct: 187 GLTVTLI 193>NP_001034672 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 GM++ +VLK Sbjct: 111 GMSLDIVLK 119>NP_001034673 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 GM++ +VLK Sbjct: 111 GMSLDIVLK 119>NP_036539 Length = 415 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GMTITLVLK 9 GM++ +VLK Sbjct: 111 GMSLDIVLK 119Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.143 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 285,933 Number of extensions: 341 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |