Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 20 509 XP_006716142 20 509 XP_005250088 20 509 XP_006716141 20 509 XP_005250085 20 509 XP_006716140 20 509 XP_005250084 20 509 XP_005250083 20 509 XP_005250082 20 509 NP_937839 17 2528 XP_005247120 17 2528 XP_006713533 17 2528 XP_006713532 17 2528 NP_005807 17 2528 NP_002378 17 3301 NP_001078846 17 3301 XP_005272048 17 3301 XP_006714680 17 3301 NP_001129386 16 5631 NP_060107 15 9605 XP_006716851 15 9605 XP_006716850 15 9605 XP_006716849 15 9605 XP_006716848 15 9605 XP_006716847 15 9605>NP_733751 Length = 4911 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3435 GMVGSEISS 3443>XP_006716142 Length = 4927 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3452 GMVGSEISS 3460>XP_005250088 Length = 4928 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3452 GMVGSEISS 3460>XP_006716141 Length = 4959 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3452 GMVGSEISS 3460>XP_005250085 Length = 4979 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3452 GMVGSEISS 3460>XP_006716140 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3452 GMVGSEISS 3460>XP_005250084 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3452 GMVGSEISS 3460>XP_005250083 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3451 GMVGSEISS 3459>XP_005250082 Length = 4983 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GMLGSEISS 9 GM+GSEISS Sbjct: 3452 GMVGSEISS 3460>NP_937839 Length = 585 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 377 LLGSEISS 384>XP_005247120 Length = 419 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 377 LLGSEISS 384>XP_006713533 Length = 568 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 361 LLGSEISS 368>XP_006713532 Length = 584 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 377 LLGSEISS 384>NP_005807 Length = 569 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 361 LLGSEISS 368>NP_002378 Length = 829 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 346 VLGSEISS 353>NP_001078846 Length = 1019 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 536 VLGSEISS 543>XP_005272048 Length = 851 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 346 VLGSEISS 353>XP_006714680 Length = 1002 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 MLGSEISS 9 +LGSEISS Sbjct: 497 VLGSEISS 504>NP_001129386 Length = 1503 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GMLGSEIS 8 G+LGSE++ Sbjct: 1029 GLLGSELA 1036>NP_060107 Length = 1099 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GMLGSEIS 8 G LG+E+S Sbjct: 1013 GSLGAEVS 1020>XP_006716851 Length = 1008 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GMLGSEIS 8 G LG+E+S Sbjct: 922 GSLGAEVS 929>XP_006716850 Length = 1121 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GMLGSEIS 8 G LG+E+S Sbjct: 1035 GSLGAEVS 1042>XP_006716849 Length = 1125 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GMLGSEIS 8 G LG+E+S Sbjct: 1039 GSLGAEVS 1046>XP_006716848 Length = 1127 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GMLGSEIS 8 G LG+E+S Sbjct: 1041 GSLGAEVS 1048>XP_006716847 Length = 1149 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GMLGSEIS 8 G LG+E+S Sbjct: 1063 GSLGAEVS 1070Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.123 0.302 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 507,501 Number of extensions: 705 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |