Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001099129 18 1482 XP_005270510 18 1482 XP_005270509 18 1482 XP_005270508 18 1482 XP_005273420 17 4312 NP_597677 16 5631 NP_056199 16 5631 XP_005248340 16 5631 XP_005248339 16 5631 XP_005248337 16 5631 XP_006714531 16 5631 XP_006714530 16 5631 NP_001166935 16 7355 NP_060111 16 7355 NP_001166934 16 7355 NP_001166936 16 7355 XP_006719559 16 7355 XP_006719558 16 7355 XP_005269072 16 7355 XP_005269071 16 7355 XP_005269070 16 7355 XP_006719557 16 7355 XP_005269069 16 7355 XP_006719556 16 7355 XP_005269068 16 7355 XP_005269067 16 7355 XP_005269066 16 7355 XP_005269065 16 7355 XP_005269064 16 7355 XP_006710416 16 7355 XP_006710415 16 7355 XP_005270511 16 7355 NP_001010860 16 7355 NP_006024 15 9605 NP_000120 15 9605 NP_001258949 15 9605 XP_005258447 15 9605 XP_006720386 15 9605 XP_006720385 15 9605 XP_005268275 15 9605 XP_006715073 15 9605>NP_001099129 Length = 624 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 GMKSETSR 8 GMKS+TSR Sbjct: 320 GMKSKTSR 327>XP_005270510 Length = 335 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 GMKSETSR 8 GMKS+TSR Sbjct: 320 GMKSKTSR 327>XP_005270509 Length = 349 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 GMKSETSR 8 GMKS+TSR Sbjct: 320 GMKSKTSR 327>XP_005270508 Length = 430 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 GMKSETSR 8 GMKS+TSR Sbjct: 320 GMKSKTSR 327>XP_005273420 Length = 396 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 MKSETSRT 9 M+S+TSRT Sbjct: 1 MESQTSRT 8>NP_597677 Length = 2804 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GMKSETSRT 9 G+KS++S+T Sbjct: 855 GIKSDSSKT 863>NP_056199 Length = 2697 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GMKSETSRT 9 G+KS++S+T Sbjct: 855 GIKSDSSKT 863>XP_005248340 Length = 2265 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GMKSETSRT 9 G+KS++S+T Sbjct: 316 GIKSDSSKT 324>XP_005248339 Length = 2584 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GMKSETSRT 9 G+KS++S+T Sbjct: 635 GIKSDSSKT 643>XP_005248337 Length = 2698 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GMKSETSRT 9 G+KS++S+T Sbjct: 855 GIKSDSSKT 863>XP_006714531 Length = 2738 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GMKSETSRT 9 G+KS++S+T Sbjct: 855 GIKSDSSKT 863>XP_006714530 Length = 2755 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GMKSETSRT 9 G+KS++S+T Sbjct: 855 GIKSDSSKT 863>NP_001166935 Length = 1674 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1196 GMNTETSGT 1204>NP_060111 Length = 1661 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1183 GMNTETSGT 1191>NP_001166934 Length = 1637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1176 GMNTETSGT 1184>NP_001166936 Length = 1621 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1160 GMNTETSGT 1168>XP_006719559 Length = 1650 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1176 GMNTETSGT 1184>XP_006719558 Length = 1644 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1183 GMNTETSGT 1191>XP_005269072 Length = 1607 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1189 GMNTETSGT 1197>XP_005269071 Length = 1614 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1196 GMNTETSGT 1204>XP_005269070 Length = 1627 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1196 GMNTETSGT 1204>XP_006719557 Length = 1631 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1196 GMNTETSGT 1204>XP_005269069 Length = 1632 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1196 GMNTETSGT 1204>XP_006719556 Length = 1655 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1176 GMNTETSGT 1184>XP_005269068 Length = 1657 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1196 GMNTETSGT 1204>XP_005269067 Length = 1662 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1183 GMNTETSGT 1191>XP_005269066 Length = 1668 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1189 GMNTETSGT 1197>XP_005269065 Length = 1670 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1196 GMNTETSGT 1204>XP_005269064 Length = 1675 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GMKSETSRT 9 GM +ETS T Sbjct: 1196 GMNTETSGT 1204>XP_006710416 Length = 304 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MKSETSR 8 MKS+TSR Sbjct: 1 MKSKTSR 7>XP_006710415 Length = 304 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MKSETSR 8 MKS+TSR Sbjct: 1 MKSKTSR 7>XP_005270511 Length = 304 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MKSETSR 8 MKS+TSR Sbjct: 1 MKSKTSR 7>NP_001010860 Length = 674 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MKSETSR 8 +KSETSR Sbjct: 107 VKSETSR 113>NP_006024 Length = 500 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MKSETSRT 9 MK+ETS T Sbjct: 489 MKNETSPT 496>NP_000120 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SETSRT 9 SETSRT Sbjct: 2 SETSRT 7>NP_001258949 Length = 637 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SETSRT 9 SETSRT Sbjct: 461 SETSRT 466>XP_005258447 Length = 536 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MKSETSRT 9 MK+ETS T Sbjct: 525 MKNETSPT 532>XP_006720386 Length = 1571 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SETSRT 9 SETSRT Sbjct: 1395 SETSRT 1400>XP_006720385 Length = 1683 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SETSRT 9 SETSRT Sbjct: 1507 SETSRT 1512>XP_005268275 Length = 1684 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SETSRT 9 SETSRT Sbjct: 1508 SETSRT 1513>XP_006715073 Length = 732 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SETSRT 9 SETSRT Sbjct: 2 SETSRT 7Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.291 0.103 0.247 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 365,647 Number of extensions: 431 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |