Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 18 1935 NP_001549 17 4312 XP_006718896 17 4312 NP_005561 16 5631 NP_037514 16 7355 NP_060555 16 7355 NP_000806 16 7355 NP_542183 16 7355 NP_001243727 16 7355 XP_005260347 16 7355 XP_005260346 16 7355 XP_005260345 16 7355 XP_005260343 16 7355 XP_005260341 16 7355 XP_006723766 16 7355 XP_006723765 16 7355 XP_005260340 16 7355 XP_005260339 16 7355 XP_005260342 16 7355 XP_006711503 16 7355 NP_001269137 15 9605 NP_001273501 15 9605 NP_689491 15 9605 NP_055586 15 9605 NP_001193962 15 9605 NP_001193963 15 9605 NP_075055 15 9605 XP_005260077 15 9605 XP_005268355 15 9605 XP_005266922 15 9605 NP_001025029 15 9605 NP_036316 15 9605 NP_057079 15 9605>NP_055365 Length = 1032 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLRSRIRAI 9 GL SRIRAI Sbjct: 903 GLGSRIRAI 911>NP_001549 Length = 578 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLRSRIRAI 9 G R+R+RA+ Sbjct: 95 GYRARVRAV 103>XP_006718896 Length = 558 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLRSRIRAI 9 G R+R+RA+ Sbjct: 75 GYRARVRAV 83>NP_005561 Length = 510 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLRSRIRAI 9 GLR+R+R + Sbjct: 8 GLRARVRPL 16>NP_037514 Length = 750 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LRSRIRAI 9 LRSRIR I Sbjct: 470 LRSRIRFI 477>NP_060555 Length = 1041 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLRSRIRAI 9 G+R+R RA+ Sbjct: 204 GIRTRSRAV 212>NP_000806 Length = 452 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLRSRIRAI 9 G+R+R+R I Sbjct: 414 GIRARLRPI 422>NP_542183 Length = 436 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 115 GLRSRVK 121>NP_001243727 Length = 680 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 359 GLRSRVK 365>XP_005260347 Length = 436 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 115 GLRSRVK 121>XP_005260346 Length = 436 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 115 GLRSRVK 121>XP_005260345 Length = 436 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 115 GLRSRVK 121>XP_005260343 Length = 545 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 224 GLRSRVK 230>XP_005260341 Length = 545 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 224 GLRSRVK 230>XP_006723766 Length = 545 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 224 GLRSRVK 230>XP_006723765 Length = 545 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 224 GLRSRVK 230>XP_005260340 Length = 545 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 224 GLRSRVK 230>XP_005260339 Length = 545 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 224 GLRSRVK 230>XP_005260342 Length = 602 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLRSRIR 7 GLRSR++ Sbjct: 281 GLRSRVK 287>XP_006711503 Length = 860 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLRSRIRAI 9 G+R+R RA+ Sbjct: 23 GIRTRSRAV 31>NP_001269137 Length = 159 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GLRSRI 6 GLRSRI Sbjct: 129 GLRSRI 134>NP_001273501 Length = 1001 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRSRIRAI 9 LRSRIR + Sbjct: 703 LRSRIREL 710>NP_689491 Length = 100 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLRSRIRAI 9 GLR + RA+ Sbjct: 78 GLRKKFRAL 86>NP_055586 Length = 1001 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRSRIRAI 9 LRSRIR + Sbjct: 703 LRSRIREL 710>NP_001193962 Length = 1000 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRSRIRAI 9 LRSRIR + Sbjct: 703 LRSRIREL 710>NP_001193963 Length = 901 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LRSRIRAI 9 LRSRIR + Sbjct: 603 LRSRIREL 610>NP_075055 Length = 1011 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LRSRIRA 8 LR+RIRA Sbjct: 415 LRARIRA 421>XP_005260077 Length = 1005 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LRSRIRA 8 LR+RIRA Sbjct: 409 LRARIRA 415>XP_005268355 Length = 332 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GLRSRIRAI 9 G RSR RA+ Sbjct: 288 GTRSRRRAV 296>XP_005266922 Length = 408 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLRSRIRAI 9 G+R RIR + Sbjct: 47 GVRQRIRKV 55>NP_001025029 Length = 408 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLRSRIRAI 9 G+R RIR + Sbjct: 47 GVRQRIRKV 55>NP_036316 Length = 408 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GLRSRIRA 8 GLR R+R+ Sbjct: 375 GLRQRLRS 382>NP_057079 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GLRSRIR 7 GLR R+R Sbjct: 146 GLRQRVR 152Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.152 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 327,187 Number of extensions: 513 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |