Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 18 1482 NP_004561 18 1482 NP_001275703 18 1482 XP_005253450 18 1482 XP_006719151 18 1482 NP_078858 18 1935 NP_001278232 18 1935 NP_001278214 18 1935 NP_113689 16 5631 NP_061731 16 5631 NP_001071160 16 7355 NP_001071159 16 7355 NP_079016 16 7355 NP_001071158 16 7355 NP_060109 16 7355 NP_001185890 16 7355 NP_060751 16 7355 NP_079111 16 7355 NP_001185891 16 7355 XP_005276966 16 7355 XP_005257746 16 7355 XP_006718976 16 7355 XP_005277781 16 7355 XP_005277780 16 7355 XP_005269436 16 7355 XP_005271059 16 7355 XP_006710811 16 7355 XP_006710809 16 7355 XP_006710808 16 7355 XP_006710807 16 7355 XP_006710806 16 7355 XP_006710805 16 7355 XP_006710804 16 7355 XP_006710803 16 7355 XP_006710802 16 7355 NP_039227 16 7355 NP_039228 16 7355 NP_005720 16 7355 NP_001004466 16 7355 NP_056164 15 9605 NP_071896 15 9605 XP_005252905 15 9605 XP_005252904 15 9605 XP_005249030 15 9605 XP_005249029 15 9605 NP_036326 15 9605>NP_001275701 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLSTTRSI 9 LLSTTRSI Sbjct: 1239 LLSTTRSI 1246>NP_004561 Length = 1445 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLSTTRSI 9 LLSTTRSI Sbjct: 1198 LLSTTRSI 1205>NP_001275703 Length = 1264 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLSTTRSI 9 LLSTTRSI Sbjct: 1017 LLSTTRSI 1024>XP_005253450 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLSTTRSI 9 LLSTTRSI Sbjct: 1239 LLSTTRSI 1246>XP_006719151 Length = 1486 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 LLSTTRSI 9 LLSTTRSI Sbjct: 1239 LLSTTRSI 1246>NP_078858 Length = 4981 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 G+LSTTR I Sbjct: 3564 GVLSTTREI 3572>NP_001278232 Length = 4983 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 G+LSTTR I Sbjct: 3566 GVLSTTREI 3574>NP_001278214 Length = 4982 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 G+LSTTR I Sbjct: 3566 GVLSTTREI 3574>NP_113689 Length = 816 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 G +STTRS+ Sbjct: 628 GEISTTRSL 636>NP_061731 Length = 936 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 G +STTRS+ Sbjct: 628 GEISTTRSL 636>NP_001071160 Length = 440 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 GLLS +RS+ Sbjct: 251 GLLSFSRSV 259>NP_001071159 Length = 447 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 GLLS +RS+ Sbjct: 258 GLLSFSRSV 266>NP_079016 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 GLLS +RS+ Sbjct: 429 GLLSFSRSV 437>NP_001071158 Length = 611 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 GLLS +RS+ Sbjct: 422 GLLSFSRSV 430>NP_060109 Length = 2916 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 G LSTTR++ Sbjct: 1428 GELSTTRAL 1436>NP_001185890 Length = 292 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 159 GLIETTRGL 167>NP_060751 Length = 261 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 128 GLIETTRGL 136>NP_079111 Length = 697 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLLSTTRS 8 G+LS TRS Sbjct: 120 GVLSVTRS 127>NP_001185891 Length = 244 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 128 GLIETTRGL 136>XP_005276966 Length = 699 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLLSTTRS 8 G+LS TRS Sbjct: 120 GVLSVTRS 127>XP_005257746 Length = 699 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLLSTTRS 8 G+LS TRS Sbjct: 120 GVLSVTRS 127>XP_006718976 Length = 598 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 GLLS +RS+ Sbjct: 429 GLLSFSRSV 437>XP_005277781 Length = 622 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 GLLS +RS+ Sbjct: 422 GLLSFSRSV 430>XP_005277780 Length = 629 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GLLSTTRSI 9 GLLS +RS+ Sbjct: 429 GLLSFSRSV 437>XP_005269436 Length = 201 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GLLS RS+ Sbjct: 12 GLLSVPRSV 20>XP_005271059 Length = 215 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 82 GLIETTRGL 90>XP_006710811 Length = 215 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 82 GLIETTRGL 90>XP_006710809 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 113 GLIETTRGL 121>XP_006710808 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 113 GLIETTRGL 121>XP_006710807 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 113 GLIETTRGL 121>XP_006710806 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 113 GLIETTRGL 121>XP_006710805 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 113 GLIETTRGL 121>XP_006710804 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 113 GLIETTRGL 121>XP_006710803 Length = 256 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 159 GLIETTRGL 167>XP_006710802 Length = 276 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GL+ TTR + Sbjct: 159 GLIETTRGL 167>NP_039227 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LLSTTRSI 9 LLST RSI Sbjct: 85 LLSTQRSI 92>NP_039228 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LLSTTRSI 9 LLST RSI Sbjct: 85 LLSTQRSI 92>NP_005720 Length = 207 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GLLSTTRSI 9 GLLS RS+ Sbjct: 12 GLLSVPRSV 20>NP_001004466 Length = 315 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 LLSTTRSI 9 LLST RSI Sbjct: 85 LLSTQRSI 92>NP_056164 Length = 1079 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GLLSTT 6 GLLSTT Sbjct: 641 GLLSTT 646>NP_071896 Length = 800 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLLSTTR 7 G+L+TTR Sbjct: 644 GILATTR 650>XP_005252905 Length = 1854 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GLLSTT 6 GLLSTT Sbjct: 743 GLLSTT 748>XP_005252904 Length = 1855 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GLLSTT 6 GLLSTT Sbjct: 743 GLLSTT 748>XP_005249030 Length = 1079 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GLLSTT 6 GLLSTT Sbjct: 641 GLLSTT 646>XP_005249029 Length = 1079 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GLLSTT 6 GLLSTT Sbjct: 641 GLLSTT 646>NP_036326 Length = 1849 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GLLSTT 6 GLLSTT Sbjct: 737 GLLSTT 742Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.129 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 320,731 Number of extensions: 453 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |