Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 19 869 NP_001087241 19 869 XP_005265799 19 869 XP_005265798 19 869 XP_005265797 19 869 NP_443723 16 7355 NP_203748 16 7355 NP_071733 16 7355 XP_005271772 16 7355 XP_005274111 16 7355 XP_005274110 16 7355 XP_006717590 16 7355>NP_000213 Length = 976 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GLIKSNAAM 9 GLIKS+AAM Sbjct: 610 GLIKSDAAM 618>NP_001087241 Length = 972 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GLIKSNAAM 9 GLIKS+AAM Sbjct: 606 GLIKSDAAM 614>XP_005265799 Length = 973 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GLIKSNAAM 9 GLIKS+AAM Sbjct: 607 GLIKSDAAM 615>XP_005265798 Length = 976 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GLIKSNAAM 9 GLIKS+AAM Sbjct: 611 GLIKSDAAM 619>XP_005265797 Length = 977 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GLIKSNAAM 9 GLIKS+AAM Sbjct: 611 GLIKSDAAM 619>NP_443723 Length = 1341 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLIKSNAAM 9 GL+K+N M Sbjct: 669 GLLKANCGM 677>NP_203748 Length = 883 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLIKSNA 7 GL+KSN+ Sbjct: 463 GLVKSNS 469>NP_071733 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKSNAAM 9 GL+K NA++ Sbjct: 36 GLVKRNASV 44>XP_005271772 Length = 884 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLIKSNA 7 GL+KSN+ Sbjct: 464 GLVKSNS 470>XP_005274111 Length = 114 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKSNAAM 9 GL+K NA++ Sbjct: 36 GLVKRNASV 44>XP_005274110 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKSNAAM 9 GL+K NA++ Sbjct: 36 GLVKRNASV 44>XP_006717590 Length = 1397 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GLIKSNAAM 9 GL+K+N M Sbjct: 725 GLLKANCGM 733Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.123 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 320,990 Number of extensions: 274 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |