Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006816 16 5631 NP_940686 16 5631 NP_940870 16 7355 XP_006721885 16 7355 XP_006715495 16 7355 XP_006715494 16 7355 XP_006715493 16 7355 NP_055672 15 9605 NP_001157790 15 9605 NP_001157791 15 9605 NP_001157789 15 9605 NP_001448 15 9605 NP_056264 15 9605 NP_001092086 15 9605 NP_005867 15 9605 NP_775871 15 9605 NP_001005340 15 9605 XP_005249635 15 9605 XP_005265039 15 9605 XP_005265038 15 9605 XP_005265035 15 9605 XP_005265034 15 9605 XP_006712257 15 9605 XP_006712256 15 9605 XP_005246298 15 9605 XP_005246297 15 9605 XP_005246299 15 9605 XP_006712255 15 9605 XP_005246296 15 9605 XP_006712254 15 9605 XP_005246295 15 9605 XP_006712253 15 9605 XP_006712252 15 9605 XP_005246294 15 9605 XP_006712251 15 9605 XP_005246293 15 9605 XP_005246292 15 9605 XP_006712250 15 9605 XP_006711756 15 9605 XP_005245738 15 9605 XP_006711755 15 9605 XP_005245737 15 9605 XP_005245134 15 9605 NP_620077 15 9605>NP_006816 Length = 602 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 GLA+TV+S Sbjct: 467 GLASTVRS 474>NP_940686 Length = 259 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GLATTVKSR 9 GLA VKSR Sbjct: 121 GLAEEVKSR 129>NP_940870 Length = 1243 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GLA T+KS Sbjct: 447 GLANTMKS 454>XP_006721885 Length = 125 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LATTVKSR 9 + TTVKSR Sbjct: 1 MRTTVKSR 8>XP_006715495 Length = 680 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GLA T+KS Sbjct: 447 GLANTMKS 454>XP_006715494 Length = 1017 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GLA T+KS Sbjct: 221 GLANTMKS 228>XP_006715493 Length = 1243 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GLA T+KS Sbjct: 447 GLANTMKS 454>NP_055672 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GL+T VKS Sbjct: 530 GLSTLVKS 537>NP_001157790 Length = 2591 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 G+A+TVK+ Sbjct: 1623 GIASTVKT 1630>NP_001157791 Length = 2578 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 G+A+TVK+ Sbjct: 1623 GIASTVKT 1630>NP_001157789 Length = 2633 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 G+A+TVK+ Sbjct: 1654 GIASTVKT 1661>NP_001448 Length = 2602 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 G+A+TVK+ Sbjct: 1623 GIASTVKT 1630>NP_056264 Length = 219 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LATTVKSR 9 LAT VK+R Sbjct: 152 LATAVKAR 159>NP_001092086 Length = 253 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LATTVKSR 9 LAT VK+R Sbjct: 186 LATAVKAR 193>NP_005867 Length = 3267 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1360 LSTTVKS 1366>NP_775871 Length = 8384 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GL+TT+ S Sbjct: 3003 GLSTTISS 3010>NP_001005340 Length = 572 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 LATT+KS Sbjct: 339 LATTLKS 345>XP_005249635 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 LATT+KS Sbjct: 339 LATTLKS 345>XP_005265039 Length = 2177 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 G+A+TVK+ Sbjct: 1654 GIASTVKT 1661>XP_005265038 Length = 2181 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 G+A+TVK+ Sbjct: 1654 GIASTVKT 1661>XP_005265035 Length = 2609 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 G+A+TVK+ Sbjct: 1654 GIASTVKT 1661>XP_005265034 Length = 2622 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLATTVKS 8 G+A+TVK+ Sbjct: 1654 GIASTVKT 1661>XP_006712257 Length = 1718 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1360 LSTTVKS 1366>XP_006712256 Length = 2418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 511 LSTTVKS 517>XP_005246298 Length = 2418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 511 LSTTVKS 517>XP_005246297 Length = 2418 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 511 LSTTVKS 517>XP_005246299 Length = 2480 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 573 LSTTVKS 579>XP_006712255 Length = 2622 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1360 LSTTVKS 1366>XP_005246296 Length = 2475 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 568 LSTTVKS 574>XP_006712254 Length = 2475 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 568 LSTTVKS 574>XP_005246295 Length = 3114 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1207 LSTTVKS 1213>XP_006712253 Length = 3117 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1210 LSTTVKS 1216>XP_006712252 Length = 3163 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1256 LSTTVKS 1262>XP_005246294 Length = 3173 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1266 LSTTVKS 1272>XP_006712251 Length = 3176 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1269 LSTTVKS 1275>XP_005246293 Length = 3206 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1299 LSTTVKS 1305>XP_005246292 Length = 3208 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1301 LSTTVKS 1307>XP_006712250 Length = 3248 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LATTVKS 8 L+TTVKS Sbjct: 1341 LSTTVKS 1347>XP_006711756 Length = 985 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GL+T VKS Sbjct: 530 GLSTLVKS 537>XP_005245738 Length = 1014 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GL+T VKS Sbjct: 493 GLSTLVKS 500>XP_006711755 Length = 1051 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GL+T VKS Sbjct: 530 GLSTLVKS 537>XP_005245737 Length = 1051 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLATTVKS 8 GL+T VKS Sbjct: 530 GLSTLVKS 537>XP_005245134 Length = 235 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LATTVKSR 9 LAT VK+R Sbjct: 168 LATAVKAR 175>NP_620077 Length = 201 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LATTVKSR 9 LAT VK+R Sbjct: 134 LATAVKAR 141Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.119 0.297 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 275,581 Number of extensions: 243 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |