Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 17 2528 NP_671714 17 2528 XP_006715890 17 2528 XP_005250160 17 2528 XP_005250159 17 2528 NP_001073960 16 7355 NP_055503 16 7355 NP_001193620 16 7355 NP_998759 16 7355 XP_006717605 16 7355 NP_115880 16 7355 NP_000375 15 9605 NP_066990 15 9605>NP_005742 Length = 3907 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLAIKESVA 9 GLAIKES A Sbjct: 2262 GLAIKESDA 2270>NP_671714 Length = 3899 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLAIKESVA 9 GLAIKES A Sbjct: 2254 GLAIKESDA 2262>XP_006715890 Length = 3860 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLAIKESVA 9 GLAIKES A Sbjct: 2215 GLAIKESDA 2223>XP_005250160 Length = 3939 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLAIKESVA 9 GLAIKES A Sbjct: 2294 GLAIKESDA 2302>XP_005250159 Length = 3952 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLAIKESVA 9 GLAIKES A Sbjct: 2307 GLAIKESDA 2315>NP_001073960 Length = 845 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GLAIKESV 8 GL+I+ESV Sbjct: 836 GLSIQESV 843>NP_055503 Length = 828 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GLAIKESV 8 GL+I+ESV Sbjct: 819 GLSIQESV 826>NP_001193620 Length = 744 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLAIKES 7 G+A+KES Sbjct: 140 GIAVKES 146>NP_998759 Length = 735 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLAIKES 7 G+A+KES Sbjct: 131 GIAVKES 137>XP_006717605 Length = 856 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GLAIKESV 8 GL+I+ESV Sbjct: 847 GLSIQESV 854>NP_115880 Length = 641 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GLAIKES 7 G+A+KES Sbjct: 37 GIAVKES 43>NP_000375 Length = 4563 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LAIKESV 8 LA+KESV Sbjct: 2822 LALKESV 2828>NP_066990 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LAIKESVA 9 + IKESVA Sbjct: 259 ITIKESVA 266Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.126 0.297 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 340,941 Number of extensions: 333 Number of successful extensions: 13 Number of sequences better than 10000.0: 13 Number of HSP's gapped: 13 Number of HSP's successfully gapped: 13 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |