Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1135 XP_006718908 18 1135 XP_005271621 18 1135 XP_006718907 18 1135 XP_006718906 18 1135 XP_005271619 18 1135 XP_005271618 18 1135 NP_055146 16 5631 XP_005262932 16 5631 NP_001073922 16 7355 NP_006181 16 7355 XP_006712618 16 7355 NP_000325 15 9605 NP_001274152 15 9605 NP_057715 15 9605 NP_054858 15 9605 NP_037461 15 9605 NP_055318 15 9605 NP_001032238 15 9605 NP_006812 15 9605 XP_006724130 15 9605 XP_006724129 15 9605 XP_005257623 15 9605 XP_006720070 15 9605 XP_006719406 15 9605>NP_000042 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI VKLVVN Sbjct: 1642 GIMVKLVVN 1650>XP_006718908 Length = 1708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI VKLVVN Sbjct: 294 GIMVKLVVN 302>XP_005271621 Length = 2708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI VKLVVN Sbjct: 1294 GIMVKLVVN 1302>XP_006718907 Length = 3050 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI VKLVVN Sbjct: 1636 GIMVKLVVN 1644>XP_006718906 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI VKLVVN Sbjct: 1642 GIMVKLVVN 1650>XP_005271619 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI VKLVVN Sbjct: 1642 GIMVKLVVN 1650>XP_005271618 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI VKLVVN Sbjct: 1642 GIMVKLVVN 1650>NP_055146 Length = 501 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GITV +V+N Sbjct: 172 GITVVMVLN 180>XP_005262932 Length = 342 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GITV +V+N Sbjct: 172 GITVVMVLN 180>NP_001073922 Length = 2190 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GITVKLVV 8 G T+KLV+ Sbjct: 439 GTTIKLVI 446>NP_006181 Length = 577 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI+VK V+N Sbjct: 345 GISVKSVLN 353>XP_006712618 Length = 577 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GI+VK V+N Sbjct: 345 GISVKSVLN 353>NP_000325 Length = 1836 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GIT+ +V+N Sbjct: 583 GITICIVLN 591>NP_001274152 Length = 1791 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GITVKLV 7 GIT+KL+ Sbjct: 213 GITIKLL 219>NP_057715 Length = 917 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GITVKLV 7 GIT+KL+ Sbjct: 709 GITLKLI 715>NP_054858 Length = 1791 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GITVKLV 7 GIT+KL+ Sbjct: 213 GITIKLL 219>NP_037461 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GITVKLV 7 GIT+KL+ Sbjct: 709 GITLKLI 715>NP_055318 Length = 2785 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITVKLVVN 9 ITV L+VN Sbjct: 2007 ITVGLIVN 2014>NP_001032238 Length = 421 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GITVKLVVN 9 GIT +V+N Sbjct: 247 GITAAVVIN 255>NP_006812 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GITVKLVVN 9 GIT +V+N Sbjct: 309 GITAAVVIN 317>XP_006724130 Length = 757 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GITVKLV 7 GIT+KL+ Sbjct: 709 GITLKLI 715>XP_006724129 Length = 882 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GITVKLV 7 GIT+KL+ Sbjct: 709 GITLKLI 715>XP_005257623 Length = 1836 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GITVKLVVN 9 GIT+ +V+N Sbjct: 583 GITICIVLN 591>XP_006720070 Length = 286 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GITVKLVVN 9 GIT +V+N Sbjct: 112 GITAAVVIN 120>XP_006719406 Length = 2380 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 ITVKLVVN 9 ITV L+VN Sbjct: 2007 ITVGLIVN 2014Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.143 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 285,811 Number of extensions: 393 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |