Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 19 869 NP_001165375 16 5631 NP_055518 16 5631 NP_000662 16 5631 NP_001275962 16 5631 NP_001275961 16 5631 NP_620689 16 5631 NP_006206 16 5631 XP_005276812 16 5631 XP_006713491 16 5631 XP_005276811 16 5631 XP_006713490 16 5631 XP_005276810 16 5631 XP_005276809 16 5631 XP_006713489 16 5631 XP_005276808 16 5631 NP_004343 16 7355 NP_995322 16 7355 XP_006722457 16 7355 XP_005254365 16 7355 NP_872317 16 7355 NP_001092010 15 9605 NP_001186759 15 9605 NP_006656 15 9605 NP_997239 15 9605 NP_001186960 15 9605 NP_079489 15 9605 NP_066022 15 9605 NP_003540 15 9605 NP_065961 15 9605 NP_001158137 15 9605 NP_001186958 15 9605 XP_006726631 15 9605 XP_006725632 15 9605 XP_006723369 15 9605 XP_006720880 15 9605 XP_006716135 15 9605 XP_006716134 15 9605 XP_005244800 15 9605 XP_006710311 15 9605>NP_002430 Length = 1137 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GISTRMGAA 9 GI TRMGAA Sbjct: 934 GIFTRMGAA 942>NP_001165375 Length = 1506 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 907 GIATRLGS 914>NP_055518 Length = 1507 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 908 GIATRLGS 915>NP_000662 Length = 374 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 GIST GAA Sbjct: 175 GISTGYGAA 183>NP_001275962 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GISTRMGAA 9 G+ TR+G+A Sbjct: 134 GLETRVGSA 142>NP_001275961 Length = 464 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GISTRMGAA 9 G+ TR+G+A Sbjct: 171 GLETRVGSA 179>NP_620689 Length = 562 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GISTRMGAA 9 G+ST +GAA Sbjct: 461 GLSTFLGAA 469>NP_006206 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GISTRMGAA 9 G+ TR+G+A Sbjct: 134 GLETRVGSA 142>XP_005276812 Length = 1507 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 908 GIATRLGS 915>XP_006713491 Length = 1425 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 826 GIATRLGS 833>XP_005276811 Length = 1507 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 908 GIATRLGS 915>XP_006713490 Length = 1507 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 908 GIATRLGS 915>XP_005276810 Length = 1507 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 908 GIATRLGS 915>XP_005276809 Length = 1507 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 908 GIATRLGS 915>XP_006713489 Length = 1507 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 908 GIATRLGS 915>XP_005276808 Length = 1507 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI+TR+G+ Sbjct: 908 GIATRLGS 915>NP_004343 Length = 193 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 GIS R G+A Sbjct: 52 GISVRSGSA 60>NP_995322 Length = 500 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GISTRMGAA 9 GIST +G+A Sbjct: 138 GISTILGSA 146>XP_006722457 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 GIS R G+A Sbjct: 83 GISVRSGSA 91>XP_005254365 Length = 500 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GISTRMGAA 9 GIST +G+A Sbjct: 138 GISTILGSA 146>NP_872317 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 GIS R G+A Sbjct: 83 GISVRSGSA 91>NP_001092010 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GISTRMG 7 G+S RMG Sbjct: 370 GLSARMG 376>NP_001186759 Length = 485 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GISTRMG 7 G+S RMG Sbjct: 312 GLSARMG 318>NP_006656 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GISTRMG 7 G+S RMG Sbjct: 370 GLSARMG 376>NP_997239 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 G+S + GAA Sbjct: 109 GVSVQQGAA 117>NP_001186960 Length = 168 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 G+S +GAA Sbjct: 57 GVSAALGAA 65>NP_079489 Length = 678 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GISTRMGAA 9 GI++++GAA Sbjct: 636 GIASQIGAA 644>NP_066022 Length = 2564 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GISTRMGAA 9 GI++++GAA Sbjct: 1960 GIASQIGAA 1968>NP_003540 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 G+S +GAA Sbjct: 306 GVSAALGAA 314>NP_065961 Length = 1934 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI++R+GA Sbjct: 1828 GIASRIGA 1835>NP_001158137 Length = 1950 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI++R+GA Sbjct: 1828 GIASRIGA 1835>NP_001186958 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 G+S +GAA Sbjct: 306 GVSAALGAA 314>XP_006726631 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ISTRMGA 8 IST MGA Sbjct: 81 ISTHMGA 87>XP_006725632 Length = 119 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ISTRMGA 8 IST MGA Sbjct: 81 ISTHMGA 87>XP_006723369 Length = 2394 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 GISTRMGAA 9 GI++++GAA Sbjct: 1960 GIASQIGAA 1968>XP_006720880 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ISTRMGA 8 IST MGA Sbjct: 81 ISTHMGA 87>XP_006716135 Length = 718 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI++R+GA Sbjct: 612 GIASRIGA 619>XP_006716134 Length = 1847 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GISTRMGA 8 GI++R+GA Sbjct: 1725 GIASRIGA 1732>XP_005244800 Length = 254 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GISTRMGAA 9 G+S + GAA Sbjct: 120 GVSVQQGAA 128>XP_006710311 Length = 119 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 ISTRMGA 8 IST MGA Sbjct: 81 ISTHMGA 87Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.126 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 337,669 Number of extensions: 404 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |