Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_997290 20 509 NP_001127854 16 5631 NP_055684 16 5631 NP_742056 16 7355 NP_001275504 16 7355 NP_001275503 16 7355 NP_742055 16 7355 NP_742057 16 7355 NP_000494 16 7355 NP_004091 16 7355 NP_742103 16 7355 NP_742101 16 7355 NP_659404 16 7355 NP_588614 16 7355 NP_001269536 16 7355 NP_001157861 16 7355 NP_001157860 16 7355 NP_001157859 16 7355 NP_001157858 16 7355 NP_057424 16 7355 XP_006724792 16 7355 XP_006720235 16 7355 XP_006716500 16 7355 XP_006716499 16 7355 XP_005251241 16 7355 XP_006716498 16 7355 XP_005251239 16 7355 XP_006715436 16 7355 XP_005266910 16 7355 XP_005266909 16 7355 XP_005266908 16 7355 XP_005266907 16 7355 NP_004560 16 7355 NP_073600 15 9605 NP_001128567 15 9605 XP_005267654 15 9605 XP_006710110 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIRMTSSNT 9 G RMTSSNT Sbjct: 1867 GTRMTSSNT 1875>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIRMTSSNT 9 G RMTSSNT Sbjct: 1662 GTRMTSSNT 1670>NP_997290 Length = 438 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GIRMTSSN 8 GIRMTSSN Sbjct: 187 GIRMTSSN 194>NP_001127854 Length = 1114 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GIRMTSS 7 GIR+TSS Sbjct: 810 GIRLTSS 816>NP_055684 Length = 963 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GIRMTSS 7 GIR+TSS Sbjct: 824 GIRLTSS 830>NP_742056 Length = 557 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 235 MTSSNT 240>NP_001275504 Length = 470 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 118 MTSSNT 123>NP_001275503 Length = 586 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 234 MTSSNT 239>NP_742055 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 240 MTSSNT 245>NP_742057 Length = 559 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 207 MTSSNT 212>NP_000494 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 240 MTSSNT 245>NP_004091 Length = 639 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIRMTSSNT 9 G MTS+NT Sbjct: 291 GAYMTSNNT 299>NP_742103 Length = 639 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIRMTSSNT 9 G MTS+NT Sbjct: 291 GAYMTSNNT 299>NP_742101 Length = 616 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIRMTSSNT 9 G MTS+NT Sbjct: 268 GAYMTSNNT 276>NP_659404 Length = 547 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GIRMTSSN 8 G RMTS+N Sbjct: 371 GNRMTSTN 378>NP_588614 Length = 789 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GIRMTSSN 8 G+RM S+N Sbjct: 589 GLRMNSAN 596>NP_001269536 Length = 535 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GIRMTSSN 8 G RMTS+N Sbjct: 359 GNRMTSTN 366>NP_001157861 Length = 1391 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IRMTSSN 8 +RMTS+N Sbjct: 1051 VRMTSAN 1057>NP_001157860 Length = 1504 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IRMTSSN 8 +RMTS+N Sbjct: 1051 VRMTSAN 1057>NP_001157859 Length = 1509 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IRMTSSN 8 +RMTS+N Sbjct: 1056 VRMTSAN 1062>NP_001157858 Length = 1609 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IRMTSSN 8 +RMTS+N Sbjct: 1051 VRMTSAN 1057>NP_057424 Length = 1601 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 IRMTSSN 8 +RMTS+N Sbjct: 1051 VRMTSAN 1057>XP_006724792 Length = 411 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GIRMTSSN 8 G RMTS+N Sbjct: 235 GNRMTSTN 242>XP_006720235 Length = 184 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GIRMTSS 7 GI+MTSS Sbjct: 93 GIQMTSS 99>XP_006716500 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 123 MTSSNT 128>XP_006716499 Length = 559 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 207 MTSSNT 212>XP_005251241 Length = 571 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 219 MTSSNT 224>XP_006716498 Length = 591 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 239 MTSSNT 244>XP_005251239 Length = 621 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 MTSSNT 9 MTSSNT Sbjct: 269 MTSSNT 274>XP_006715436 Length = 585 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIRMTSSNT 9 G MTS+NT Sbjct: 237 GAYMTSNNT 245>XP_005266910 Length = 616 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIRMTSSNT 9 G MTS+NT Sbjct: 268 GAYMTSNNT 276>XP_005266909 Length = 620 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIRMTSSNT 9 G MTS+NT Sbjct: 291 GAYMTSNNT 299>XP_005266908 Length = 645 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIRMTSSNT 9 G MTS+NT Sbjct: 291 GAYMTSNNT 299>XP_005266907 Length = 645 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIRMTSSNT 9 G MTS+NT Sbjct: 291 GAYMTSNNT 299>NP_004560 Length = 188 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GIRMTSS 7 GI+MTSS Sbjct: 97 GIQMTSS 103>NP_073600 Length = 1204 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RMTSSNT 9 R+T+SNT Sbjct: 547 RLTASNT 553>NP_001128567 Length = 1204 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RMTSSNT 9 R+T+SNT Sbjct: 547 RLTASNT 553>XP_005267654 Length = 212 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GIRMTSSN 8 G+RM +SN Sbjct: 179 GLRMRASN 186>XP_006710110 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 RMTSSNT 9 ++TSSNT Sbjct: 101 KLTSSNT 107Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.305 0.114 0.287 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 289,675 Number of extensions: 332 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |