Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 18 1135 XP_006716142 18 1135 XP_005250088 18 1135 XP_006716141 18 1135 XP_005250085 18 1135 XP_006716140 18 1135 XP_005250084 18 1135 XP_005250083 18 1135 XP_005250082 18 1135 NP_001157570 18 1935 NP_004376 18 1935 NP_001129633 16 5631 NP_775789 16 5631 XP_006716494 16 5631 XP_005251231 16 5631 XP_006716493 16 5631 XP_006716492 16 5631 XP_006716491 16 5631 XP_006716490 16 5631 NP_001129632 16 5631 NP_078809 16 7355 NP_067628 16 7355 NP_004764 16 7355 XP_005256012 16 7355 XP_006723286 15 9605 XP_006723285 15 9605 NP_002437 15 9605>NP_733751 Length = 4911 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4186 GIAESAALR 4194>XP_006716142 Length = 4927 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4202 GIAESAALR 4210>XP_005250088 Length = 4928 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4203 GIAESAALR 4211>XP_006716141 Length = 4959 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4234 GIAESAALR 4242>XP_005250085 Length = 4979 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4258 GIAESAALR 4266>XP_006716140 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4257 GIAESAALR 4265>XP_005250084 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4257 GIAESAALR 4265>XP_005250083 Length = 4982 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4257 GIAESAALR 4265>XP_005250082 Length = 4983 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAESA LR Sbjct: 4258 GIAESAALR 4266>NP_001157570 Length = 1642 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAE +TLR Sbjct: 890 GIAEKSTLR 898>NP_004376 Length = 3396 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GIAESATLR 9 GIAE +TLR Sbjct: 890 GIAEKSTLR 898>NP_001129633 Length = 590 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 171 GATESATIR 179>NP_775789 Length = 681 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 171 GATESATIR 179>XP_006716494 Length = 598 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 171 GATESATIR 179>XP_005251231 Length = 618 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 108 GATESATIR 116>XP_006716493 Length = 628 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 171 GATESATIR 179>XP_006716492 Length = 654 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 171 GATESATIR 179>XP_006716491 Length = 661 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 151 GATESATIR 159>XP_006716490 Length = 663 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 153 GATESATIR 161>NP_001129632 Length = 632 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIAESATLR 9 G ESAT+R Sbjct: 171 GATESATIR 179>NP_078809 Length = 411 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IAESATLR 9 IAE+ATL+ Sbjct: 274 IAEAATLK 281>NP_067628 Length = 395 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IAESATLR 9 IAE+ATL+ Sbjct: 252 IAEAATLK 259>NP_004764 Length = 155 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 IAESATLR 9 + ESATLR Sbjct: 95 LGESATLR 102>XP_005256012 Length = 395 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 IAESATLR 9 IAE+ATL+ Sbjct: 252 IAEAATLK 259>XP_006723286 Length = 524 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GIAESATL 8 G+A SATL Sbjct: 309 GLAPSATL 316>XP_006723285 Length = 620 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GIAESATL 8 G+A SATL Sbjct: 405 GLAPSATL 412>NP_002437 Length = 954 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GIAESATL 8 G+A SATL Sbjct: 739 GLAPSATL 746Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.310 0.124 0.302 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 210,610 Number of extensions: 265 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |