Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_116321 17 2528 XP_005258102 17 2528 NP_001136099 17 3301 NP_997304 17 3301 NP_001136100 17 3301 NP_060614 17 3301 NP_037468 17 3301 NP_066022 16 5631 XP_006723369 16 5631 NP_001008708 16 7355 NP_001030025 15 9605 NP_000319 15 9605 NP_001892 15 9605 NP_001189333 15 9605 NP_001188306 15 9605 NP_001173 15 9605 NP_689829 15 9605 NP_078966 15 9605 NP_653326 15 9605 NP_061152 15 9605 NP_891847 15 9605 NP_060681 15 9605 XP_006724971 15 9605 XP_006724970 15 9605 XP_005272690 15 9605 XP_006724601 15 9605 XP_005254741 15 9605 XP_005254740 15 9605 XP_005254739 15 9605 XP_006716112 15 9605 XP_005250550 15 9605 XP_005248316 15 9605 XP_006714512 15 9605 XP_006714511 15 9605 XP_006714510 15 9605 XP_006713671 15 9605 XP_006710801 15 9605 NP_079232 15 9605>NP_116321 Length = 637 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 HRTTSLIS 9 H TTSLIS Sbjct: 204 HSTTSLIS 211>XP_005258102 Length = 607 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 HRTTSLIS 9 H TTSLIS Sbjct: 174 HSTTSLIS 181>NP_001136099 Length = 437 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GHRTTSLI 8 GHR TS++ Sbjct: 403 GHRDTSMV 410>NP_997304 Length = 694 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 HRTTSLI 8 H+TTSLI Sbjct: 370 HKTTSLI 376>NP_001136100 Length = 454 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GHRTTSLI 8 GHR TS++ Sbjct: 381 GHRDTSMV 388>NP_060614 Length = 476 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GHRTTSLI 8 GHR TS++ Sbjct: 403 GHRDTSMV 410>NP_037468 Length = 476 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GHRTTSLI 8 GHR TS++ Sbjct: 403 GHRETSMV 410>NP_066022 Length = 2564 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 HRTTSLIS 9 HRT LIS Sbjct: 326 HRTVGLIS 333>XP_006723369 Length = 2394 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 HRTTSLIS 9 HRT LIS Sbjct: 326 HRTVGLIS 333>NP_001008708 Length = 184 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GHRTTSLI 8 G+RTT++I Sbjct: 86 GYRTTTVI 93>NP_001030025 Length = 1152 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HRTTSLIS 9 HRT L+S Sbjct: 232 HRTPQLVS 239>NP_000319 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HRTTSLIS 9 HRT L+S Sbjct: 232 HRTPQLVS 239>NP_001892 Length = 349 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 HRTTSL 7 HRTT+L Sbjct: 296 HRTTTL 301>NP_001189333 Length = 502 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GHRTTSLIS 9 G TTSLIS Sbjct: 246 GAPTTSLIS 254>NP_001188306 Length = 511 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GHRTTSLIS 9 G TTSLIS Sbjct: 191 GAPTTSLIS 199>NP_001173 Length = 539 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GHRTTSLIS 9 G TTSLIS Sbjct: 219 GAPTTSLIS 227>NP_689829 Length = 723 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GHRTTSLI 8 GH T SLI Sbjct: 320 GHDTISLI 327>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HRTTSLIS 9 H T+SL+S Sbjct: 6243 HSTSSLVS 6250>NP_653326 Length = 361 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GHRTTSLIS 9 G RT+ LIS Sbjct: 248 GDRTSDLIS 256>NP_061152 Length = 1858 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 GHRTTS 6 GH TTS Sbjct: 1730 GHHTTS 1735>NP_891847 Length = 1858 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 GHRTTS 6 GH TTS Sbjct: 1730 GHHTTS 1735>NP_060681 Length = 678 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HRTTSLI 8 H+T+SLI Sbjct: 456 HKTSSLI 462>XP_006724971 Length = 138 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 HRTTSL 7 H+TTSL Sbjct: 119 HKTTSL 124>XP_006724970 Length = 138 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 HRTTSL 7 H+TTSL Sbjct: 119 HKTTSL 124>XP_005272690 Length = 704 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HRTTSLIS 9 HRT L+S Sbjct: 232 HRTPQLVS 239>XP_006724601 Length = 1020 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 HRTTSLIS 9 HRT L+S Sbjct: 232 HRTPQLVS 239>XP_005254741 Length = 438 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GHRTTSLI 8 GH TTS I Sbjct: 24 GHFTTSTI 31>XP_005254740 Length = 511 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GHRTTSLI 8 GH TTS I Sbjct: 97 GHFTTSTI 104>XP_005254739 Length = 511 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GHRTTSLI 8 GH TTS I Sbjct: 97 GHFTTSTI 104>XP_006716112 Length = 1816 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 GHRTTS 6 GH TTS Sbjct: 1688 GHHTTS 1693>XP_005250550 Length = 1858 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 GHRTTS 6 GH TTS Sbjct: 1730 GHHTTS 1735>XP_005248316 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GHRTTSLIS 9 G RT+ LIS Sbjct: 257 GDRTSDLIS 265>XP_006714512 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GHRTTSLIS 9 G RT+ LIS Sbjct: 265 GDRTSDLIS 273>XP_006714511 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GHRTTSLIS 9 G RT+ LIS Sbjct: 265 GDRTSDLIS 273>XP_006714510 Length = 404 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GHRTTSLIS 9 G RT+ LIS Sbjct: 265 GDRTSDLIS 273>XP_006713671 Length = 576 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GHRTTSLI 8 GH T SLI Sbjct: 173 GHDTISLI 180>XP_006710801 Length = 647 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 HRTTSLI 8 H+T+SLI Sbjct: 425 HKTSSLI 431>NP_079232 Length = 643 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GHRTTSLI 8 GH TTS I Sbjct: 229 GHFTTSTI 236Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.124 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 488,053 Number of extensions: 532 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |