Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_056013 18 1135 NP_001274365 18 1135 XP_005271814 18 1135 XP_005271813 18 1135 XP_006715738 18 1135 XP_005271812 18 1135 XP_005271810 18 1135 XP_005271809 18 1135 XP_005271808 18 1135 XP_005271807 18 1135 NP_005742 18 1935 NP_671714 18 1935 XP_006715890 18 1935 XP_005250160 18 1935 XP_005250159 18 1935 NP_004590 16 5631 XP_006724373 16 5631 NP_689991 15 9605 NP_001073932 15 9605 NP_001368 15 9605 NP_776161 15 9605 NP_001127812 15 9605 NP_115678 15 9605 NP_071423 15 9605 NP_001273359 15 9605 NP_620147 15 9605 XP_006718966 15 9605 XP_006718329 15 9605 XP_006718328 15 9605 XP_006715855 15 9605 XP_006714730 15 9605 XP_005272100 15 9605 XP_005262954 15 9605 XP_005262953 15 9605 XP_005262950 15 9605>NP_056013 Length = 1261 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1148 GERSALLAA 1156>NP_001274365 Length = 1271 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1205 GERSALLAA 1213>XP_005271814 Length = 1047 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 934 GERSALLAA 942>XP_005271813 Length = 1214 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1148 GERSALLAA 1156>XP_006715738 Length = 1229 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1163 GERSALLAA 1171>XP_005271812 Length = 1245 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1220 GERSALLAA 1228>XP_005271810 Length = 1276 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1163 GERSALLAA 1171>XP_005271809 Length = 1286 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1220 GERSALLAA 1228>XP_005271808 Length = 1318 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1205 GERSALLAA 1213>XP_005271807 Length = 1333 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GERSVLLAA 9 GERS LLAA Sbjct: 1220 GERSALLAA 1228>NP_005742 Length = 3907 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ERSVLLAA 9 ERSVLLAA Sbjct: 3037 ERSVLLAA 3044>NP_671714 Length = 3899 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ERSVLLAA 9 ERSVLLAA Sbjct: 3029 ERSVLLAA 3036>XP_006715890 Length = 3860 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ERSVLLAA 9 ERSVLLAA Sbjct: 2990 ERSVLLAA 2997>XP_005250160 Length = 3939 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ERSVLLAA 9 ERSVLLAA Sbjct: 3069 ERSVLLAA 3076>XP_005250159 Length = 3952 Score = 17.7 bits (34), Expect = 1935 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 ERSVLLAA 9 ERSVLLAA Sbjct: 3082 ERSVLLAA 3089>NP_004590 Length = 1141 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GERSVLLA 8 G+R+VLLA Sbjct: 1100 GQRAVLLA 1107>XP_006724373 Length = 1111 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 GERSVLLA 8 G+R+VLLA Sbjct: 1070 GQRAVLLA 1077>NP_689991 Length = 518 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GERSVLL 7 GER++LL Sbjct: 335 GERAILL 341>NP_001073932 Length = 4314 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GERSVLL 7 GE+SVLL Sbjct: 2919 GEQSVLL 2925>NP_001368 Length = 4307 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GERSVLL 7 GE+SVLL Sbjct: 2919 GEQSVLL 2925>NP_776161 Length = 990 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GERSVLLAA 9 GER LLA+ Sbjct: 229 GERRALLAS 237>NP_001127812 Length = 122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GERSVLLA 8 G R+VLLA Sbjct: 91 GNRAVLLA 98>NP_115678 Length = 122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GERSVLLA 8 G R+VLLA Sbjct: 91 GNRAVLLA 98>NP_071423 Length = 686 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GERSVL 6 GERSVL Sbjct: 608 GERSVL 613>NP_001273359 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GERSVLLAA 9 GE S+ LAA Sbjct: 521 GEESISLAA 529>NP_620147 Length = 666 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GERSVLLAA 9 GE S+ LAA Sbjct: 581 GEESISLAA 589>XP_006718966 Length = 4300 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GERSVLL 7 GE+SVLL Sbjct: 2912 GEQSVLL 2918>XP_006718329 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GERSVL 6 GERSVL Sbjct: 390 GERSVL 395>XP_006718328 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GERSVL 6 GERSVL Sbjct: 390 GERSVL 395>XP_006715855 Length = 122 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GERSVLLA 8 G R+VLLA Sbjct: 91 GNRAVLLA 98>XP_006714730 Length = 338 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GERSVL 6 GERSVL Sbjct: 235 GERSVL 240>XP_005272100 Length = 658 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GERSVL 6 GERSVL Sbjct: 580 GERSVL 585>XP_005262954 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GERSVLL 7 GER++LL Sbjct: 268 GERAILL 274>XP_005262953 Length = 469 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GERSVLL 7 GER++LL Sbjct: 286 GERAILL 292>XP_005262950 Length = 518 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GERSVLL 7 GER++LL Sbjct: 335 GERAILL 341Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.130 0.316 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 381,101 Number of extensions: 667 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |