Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002221 19 869 NP_001895 19 869 NP_001091680 19 869 NP_068831 19 869 NP_001091679 19 869 XP_006721941 19 869 XP_006721940 19 869 XP_006721939 19 869 XP_006721938 19 869 XP_006721937 19 869 XP_006721936 19 869 XP_006721935 19 869 XP_006721934 19 869 XP_005257370 19 869 XP_006713048 19 869 XP_006713047 19 869 XP_006713046 19 869 XP_005264943 19 869 NP_079408 17 4312 XP_006714089 17 4312 XP_006714088 17 4312 XP_005262715 17 4312 NP_857594 16 5631 XP_005270529 16 5631 NP_075561 15 9605 XP_006714554 15 9605 XP_005248410 15 9605 XP_005248407 15 9605 XP_005248406 15 9605 XP_005248404 15 9605 XP_005248403 15 9605 XP_006714552 15 9605 XP_005248402 15 9605>NP_002221 Length = 745 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 259 GAKMAVRLA 267>NP_001895 Length = 781 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 268 GAKMAVRLA 276>NP_001091680 Length = 781 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 268 GAKMAVRLA 276>NP_068831 Length = 745 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 259 GAKMAVRLA 267>NP_001091679 Length = 781 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 268 GAKMAVRLA 276>XP_006721941 Length = 745 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 259 GAKMAVRLA 267>XP_006721940 Length = 745 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 259 GAKMAVRLA 267>XP_006721939 Length = 745 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 259 GAKMAVRLA 267>XP_006721938 Length = 745 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 259 GAKMAVRLA 267>XP_006721937 Length = 745 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 259 GAKMAVRLA 267>XP_006721936 Length = 745 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 259 GAKMAVRLA 267>XP_006721935 Length = 762 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 276 GAKMAVRLA 284>XP_006721934 Length = 783 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 297 GAKMAVRLA 305>XP_005257370 Length = 783 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 297 GAKMAVRLA 305>XP_006713048 Length = 720 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 268 GAKMAVRLA 276>XP_006713047 Length = 774 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 261 GAKMAVRLA 269>XP_006713046 Length = 774 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 261 GAKMAVRLA 269>XP_005264943 Length = 781 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GAKMAVRFA 9 GAKMAVR A Sbjct: 268 GAKMAVRLA 276>NP_079408 Length = 1342 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GAKMAVRF 8 GAKM RF Sbjct: 953 GAKMVARF 960>XP_006714089 Length = 1281 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GAKMAVRF 8 GAKM RF Sbjct: 953 GAKMVARF 960>XP_006714088 Length = 1283 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GAKMAVRF 8 GAKM RF Sbjct: 894 GAKMVARF 901>XP_005262715 Length = 1320 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GAKMAVRF 8 GAKM RF Sbjct: 931 GAKMVARF 938>NP_857594 Length = 191 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GAKMAVRF 8 GA+ AVRF Sbjct: 74 GARTAVRF 81>XP_005270529 Length = 241 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GAKMAVRF 8 GA+ AVRF Sbjct: 124 GARTAVRF 131>NP_075561 Length = 3197 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 3062 GAKAAVRKA 3070>XP_006714554 Length = 1442 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 1307 GAKAAVRKA 1315>XP_005248410 Length = 2132 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 1997 GAKAAVRKA 2005>XP_005248407 Length = 3208 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 3073 GAKAAVRKA 3081>XP_005248406 Length = 3214 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 3079 GAKAAVRKA 3087>XP_005248404 Length = 3250 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 3115 GAKAAVRKA 3123>XP_005248403 Length = 3250 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 3115 GAKAAVRKA 3123>XP_006714552 Length = 3251 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 3116 GAKAAVRKA 3124>XP_005248402 Length = 3251 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GAKMAVRFA 9 GAK AVR A Sbjct: 3116 GAKAAVRKA 3124Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.336 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 235,981 Number of extensions: 178 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |