Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_945352 18 1135 XP_005266141 18 1135 NP_001129941 17 3301 NP_076432 17 3301 XP_005247785 17 3301 XP_005247784 17 3301 XP_005247783 17 3301 XP_005247782 17 3301 XP_006719789 17 4312 NP_001191387 16 5631 NP_001191388 16 5631 NP_683760 16 5631 NP_009087 16 5631 NP_001275514 16 5631 NP_061117 16 5631 NP_741982 16 5631 NP_116246 16 5631 XP_005254200 16 5631 XP_005266502 16 5631 XP_005248303 16 5631 NP_001129705 16 5631 NP_848638 16 7355 NP_001263347 16 7355 NP_055681 16 7355 NP_001398 16 7355 NP_055633 16 7355 XP_005277842 16 7355 XP_006718461 16 7355 XP_006718460 16 7355 XP_005266194 16 7355 XP_005266193 16 7355 XP_005266191 16 7355 XP_005266190 16 7355 XP_005266189 16 7355 NP_002607 15 9605 NP_787071 15 9605 NP_004103 15 9605 XP_005256747 15 9605 XP_005256746 15 9605>NP_945352 Length = 184 Score = 18.5 bits (36), Expect = 1135 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 GAAPVQSQR 9 GAAP+Q+Q+ Sbjct: 114 GAAPIQNQQ 122>XP_005266141 Length = 184 Score = 18.5 bits (36), Expect = 1135 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 GAAPVQSQR 9 GAAP+Q+Q+ Sbjct: 114 GAAPIQNQQ 122>NP_001129941 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AAPVQSQR 9 AAPV SQR Sbjct: 312 AAPVPSQR 319>NP_076432 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AAPVQSQR 9 AAPV SQR Sbjct: 312 AAPVPSQR 319>XP_005247785 Length = 488 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AAPVQSQR 9 AAPV SQR Sbjct: 312 AAPVPSQR 319>XP_005247784 Length = 569 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AAPVQSQR 9 AAPV SQR Sbjct: 306 AAPVPSQR 313>XP_005247783 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AAPVQSQR 9 AAPV SQR Sbjct: 312 AAPVPSQR 319>XP_005247782 Length = 575 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 AAPVQSQR 9 AAPV SQR Sbjct: 312 AAPVPSQR 319>XP_006719789 Length = 363 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GAAPVQS 7 GA+PVQS Sbjct: 15 GASPVQS 21>NP_001191387 Length = 417 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GA PVQS Sbjct: 358 GAVPVQS 364>NP_001191388 Length = 285 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GA PVQS Sbjct: 226 GAVPVQS 232>NP_683760 Length = 417 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GA PVQS Sbjct: 358 GAVPVQS 364>NP_009087 Length = 799 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GAAPVQSQR 9 GAAP Q R Sbjct: 194 GAAPAQQPR 202>NP_001275514 Length = 332 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GAAP QS Sbjct: 62 GAAPAQS 68>NP_061117 Length = 423 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GA PVQS Sbjct: 358 GAVPVQS 364>NP_741982 Length = 373 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GAAP QS Sbjct: 62 GAAPAQS 68>NP_116246 Length = 547 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GAAP QS Sbjct: 62 GAAPAQS 68>XP_005254200 Length = 374 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GAAP QS Sbjct: 62 GAAPAQS 68>XP_005266502 Length = 423 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GA PVQS Sbjct: 358 GAVPVQS 364>XP_005248303 Length = 299 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GAAPVQS 7 GAAP QS Sbjct: 11 GAAPAQS 17>NP_001129705 Length = 817 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GAAPVQSQR 9 GAAP SQ+ Sbjct: 528 GAAPSHSQK 536>NP_848638 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 APVQSQ 8 APVQSQ Sbjct: 22 APVQSQ 27>NP_001263347 Length = 2334 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AAPVQSQ 8 AAPVQS+ Sbjct: 776 AAPVQSR 782>NP_055681 Length = 2357 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AAPVQSQ 8 AAPVQS+ Sbjct: 776 AAPVQSR 782>NP_001398 Length = 3312 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GAAPVQSQR 9 G PV SQR Sbjct: 181 GPKPVSSQR 189>NP_055633 Length = 1216 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 APVQSQ 8 APVQSQ Sbjct: 559 APVQSQ 564>XP_005277842 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 APVQSQ 8 APVQSQ Sbjct: 95 APVQSQ 100>XP_006718461 Length = 1247 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 APVQSQ 8 APVQSQ Sbjct: 559 APVQSQ 564>XP_006718460 Length = 1392 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 APVQSQ 8 APVQSQ Sbjct: 704 APVQSQ 709>XP_005266194 Length = 2379 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AAPVQSQ 8 AAPVQS+ Sbjct: 776 AAPVQSR 782>XP_005266193 Length = 2248 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AAPVQSQ 8 AAPVQS+ Sbjct: 924 AAPVQSR 930>XP_005266191 Length = 2379 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AAPVQSQ 8 AAPVQS+ Sbjct: 776 AAPVQSR 782>XP_005266190 Length = 2485 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AAPVQSQ 8 AAPVQS+ Sbjct: 924 AAPVQSR 930>XP_005266189 Length = 2505 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AAPVQSQ 8 AAPVQS+ Sbjct: 924 AAPVQSR 930>NP_002607 Length = 1290 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GAAPVQS 7 G+APVQ+ Sbjct: 600 GSAPVQA 606>NP_787071 Length = 739 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GAAPVQSQ 8 GAAPV ++ Sbjct: 290 GAAPVSAE 297>NP_004103 Length = 225 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GAAPVQSQR 9 G+ PV +QR Sbjct: 20 GSRPVSAQR 28>XP_005256747 Length = 1230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GAAPVQS 7 G+APVQ+ Sbjct: 600 GSAPVQA 606>XP_005256746 Length = 1290 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GAAPVQS 7 G+APVQ+ Sbjct: 600 GSAPVQA 606Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.117 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 584,453 Number of extensions: 936 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |