Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_835454 18 1935 NP_037498 17 4312 NP_001010876 16 5631 NP_001230688 16 5631 NP_004196 16 5631 NP_741994 16 5631 XP_005271779 16 5631 XP_005271778 16 5631 NP_775754 16 7355 NP_001077086 16 7355 NP_115971 16 7355 NP_055596 16 7355 NP_004496 16 7355 XP_005256902 16 7355 XP_006716556 16 7355 XP_006716555 16 7355 XP_006716554 16 7355 NP_061111 15 9605 NP_055245 15 9605 NP_061830 15 9605 NP_001230723 15 9605 NP_002074 15 9605 NP_001230724 15 9605 XP_005267597 15 9605>NP_835454 Length = 562 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FYRLYAVS 8 FYR++AVS Sbjct: 546 FYRMHAVS 553>NP_037498 Length = 822 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 FYRLYA 6 FYR+YA Sbjct: 332 FYRIYA 337>NP_001010876 Length = 128 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FYRLYAVSL 9 FY +Y VSL Sbjct: 24 FYTVYYVSL 32>NP_001230688 Length = 362 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YRLYAVS 8 Y LYAVS Sbjct: 298 YNLYAVS 304>NP_004196 Length = 605 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YRLYAVS 8 Y LYAVS Sbjct: 541 YNLYAVS 547>NP_741994 Length = 396 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YRLYAVS 8 Y LYAVS Sbjct: 332 YNLYAVS 338>XP_005271779 Length = 605 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YRLYAVS 8 Y LYAVS Sbjct: 541 YNLYAVS 547>XP_005271778 Length = 605 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 YRLYAVS 8 Y LYAVS Sbjct: 541 YNLYAVS 547>NP_775754 Length = 531 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 YRLYAVS 8 +R+YAVS Sbjct: 19 FRIYAVS 25>NP_001077086 Length = 1591 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FYRLYAVS 8 FYR+ AVS Sbjct: 1579 FYRVKAVS 1586>NP_115971 Length = 1604 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YRLYAVS 8 Y LYA+S Sbjct: 1510 YNLYAIS 1516>NP_055596 Length = 1594 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FYRLYAVS 8 FYR+ AVS Sbjct: 1582 FYRVKAVS 1589>NP_004496 Length = 1406 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YRLYAVS 8 Y LYA+S Sbjct: 1312 YNLYAIS 1318>XP_005256902 Length = 1406 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 YRLYAVS 8 Y LYA+S Sbjct: 1312 YNLYAIS 1318>XP_006716556 Length = 1048 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FYRLYAVS 8 FYR+ AVS Sbjct: 1036 FYRVKAVS 1043>XP_006716555 Length = 1539 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FYRLYAVS 8 FYR+ AVS Sbjct: 1527 FYRVKAVS 1534>XP_006716554 Length = 1591 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FYRLYAVS 8 FYR+ AVS Sbjct: 1579 FYRVKAVS 1586>NP_061111 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FYRLYAVSL 9 FYR +AV + Sbjct: 266 FYRKFAVPM 274>NP_055245 Length = 219 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FYRLYAVS 8 FY LY++S Sbjct: 156 FYGLYSMS 163>NP_061830 Length = 701 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FYRLYAVSL 9 F R+Y VSL Sbjct: 270 FPRVYGVSL 278>NP_001230723 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FYRLYAVSL 9 FYR +AV + Sbjct: 266 FYRKFAVPM 274>NP_002074 Length = 190 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FYRLYAVSL 9 FY L A+SL Sbjct: 8 FYDLSAISL 16>NP_001230724 Length = 414 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FYRLYAVSL 9 FYR +AV + Sbjct: 266 FYRKFAVPM 274>XP_005267597 Length = 219 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FYRLYAVS 8 FY LY++S Sbjct: 156 FYGLYSMS 163Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.153 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 414,362 Number of extensions: 492 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |