Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_149037 18 1135 NP_001171700 18 1135 NP_005742 18 1482 NP_671714 18 1482 XP_006715890 18 1482 XP_005250160 18 1482 XP_005250159 18 1482 NP_874364 16 7355 NP_055877 15 9605 NP_001275656 15 9605 NP_001275657 15 9605 NP_065761 15 9605 NP_001034864 15 9605 XP_006717794 15 9605 XP_005269715 15 9605 XP_005245975 15 9605>NP_149037 Length = 301 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 FVSQIQLEA 9 FVSQIQ+E+ Sbjct: 238 FVSQIQIES 246>NP_001171700 Length = 301 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 FVSQIQLEA 9 FVSQIQ+E+ Sbjct: 238 FVSQIQIES 246>NP_005742 Length = 3907 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VSQIQLEA 9 VSQIQLEA Sbjct: 2556 VSQIQLEA 2563>NP_671714 Length = 3899 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VSQIQLEA 9 VSQIQLEA Sbjct: 2548 VSQIQLEA 2555>XP_006715890 Length = 3860 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VSQIQLEA 9 VSQIQLEA Sbjct: 2509 VSQIQLEA 2516>XP_005250160 Length = 3939 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VSQIQLEA 9 VSQIQLEA Sbjct: 2588 VSQIQLEA 2595>XP_005250159 Length = 3952 Score = 18.1 bits (35), Expect = 1482 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VSQIQLEA 9 VSQIQLEA Sbjct: 2601 VSQIQLEA 2608>NP_874364 Length = 214 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVSQIQLEA 9 F+S ++LEA Sbjct: 193 FLSSVELEA 201>NP_055877 Length = 1664 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVSQIQLEA 9 F+S+I +EA Sbjct: 1161 FISEIGIEA 1169>NP_001275656 Length = 1400 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVSQIQLEA 9 F+S+I +EA Sbjct: 1161 FISEIGIEA 1169>NP_001275657 Length = 1542 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVSQIQLEA 9 F+S+I +EA Sbjct: 1041 FISEIGIEA 1049>NP_065761 Length = 583 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VSQIQLEA 9 V Q+QLEA Sbjct: 413 VRQLQLEA 420>NP_001034864 Length = 1661 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FVSQIQL 7 FVS+IQL Sbjct: 1354 FVSKIQL 1360>XP_006717794 Length = 1194 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVSQIQLEA 9 F+S+I +EA Sbjct: 1161 FISEIGIEA 1169>XP_005269715 Length = 1230 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVSQIQLEA 9 F+S+I +EA Sbjct: 1161 FISEIGIEA 1169>XP_005245975 Length = 1661 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FVSQIQL 7 FVS+IQL Sbjct: 1354 FVSKIQL 1360Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.133 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 330,794 Number of extensions: 422 Number of successful extensions: 16 Number of sequences better than 10000.0: 16 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 16 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |