Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1135 XP_006718908 18 1135 XP_005271621 18 1135 XP_006718907 18 1135 XP_006718906 18 1135 XP_005271619 18 1135 XP_005271618 18 1135 NP_001245245 16 7355 NP_060568 16 7355 NP_001245244 16 7355 NP_115544 16 7355 XP_005247237 16 7355 XP_006713587 16 7355 XP_005247233 16 7355 XP_006713586 16 7355 NP_001360 15 9605 NP_001153844 15 9605 NP_113654 15 9605 NP_775760 15 9605 NP_001193856 15 9605 XP_006716727 15 9605 XP_005251134 15 9605 XP_006715067 15 9605 XP_005248319 15 9605>NP_000042 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNLLQLSK 9 VNLLQLSK Sbjct: 1649 VNLLQLSK 1656>XP_006718908 Length = 1708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNLLQLSK 9 VNLLQLSK Sbjct: 301 VNLLQLSK 308>XP_005271621 Length = 2708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNLLQLSK 9 VNLLQLSK Sbjct: 1301 VNLLQLSK 1308>XP_006718907 Length = 3050 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNLLQLSK 9 VNLLQLSK Sbjct: 1643 VNLLQLSK 1650>XP_006718906 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNLLQLSK 9 VNLLQLSK Sbjct: 1649 VNLLQLSK 1656>XP_005271619 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNLLQLSK 9 VNLLQLSK Sbjct: 1649 VNLLQLSK 1656>XP_005271618 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 VNLLQLSK 9 VNLLQLSK Sbjct: 1649 VNLLQLSK 1656>NP_001245245 Length = 883 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVNLLQLSK 9 FVN ++SK Sbjct: 519 FVNFFEMSK 527>NP_060568 Length = 883 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVNLLQLSK 9 FVN ++SK Sbjct: 519 FVNFFEMSK 527>NP_001245244 Length = 914 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVNLLQLSK 9 FVN ++SK Sbjct: 550 FVNFFEMSK 558>NP_115544 Length = 830 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 FVNLLQLSK 9 FVN L LSK Sbjct: 751 FVNSLLLSK 759>XP_005247237 Length = 757 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVNLLQLSK 9 FVN ++SK Sbjct: 349 FVNFFEMSK 357>XP_006713587 Length = 889 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVNLLQLSK 9 FVN ++SK Sbjct: 550 FVNFFEMSK 558>XP_005247233 Length = 927 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVNLLQLSK 9 FVN ++SK Sbjct: 519 FVNFFEMSK 527>XP_006713586 Length = 958 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVNLLQLSK 9 FVN ++SK Sbjct: 550 FVNFFEMSK 558>NP_001360 Length = 4624 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FVNLLQLSK 9 ++NL++LSK Sbjct: 3943 WLNLVELSK 3951>NP_001153844 Length = 1148 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVNLLQLSK 9 ++NL QLS+ Sbjct: 373 YINLRQLSE 381>NP_113654 Length = 1246 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVNLLQLSK 9 ++NL QLS+ Sbjct: 471 YINLRQLSE 479>NP_775760 Length = 1585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 FVNLLQ 6 F+NLLQ Sbjct: 277 FINLLQ 282>NP_001193856 Length = 4707 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FVNLLQLSK 9 ++NL++LSK Sbjct: 4025 WLNLVELSK 4033>XP_006716727 Length = 1139 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVNLLQLSK 9 ++NL QLS+ Sbjct: 364 YINLRQLSE 372>XP_005251134 Length = 1148 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVNLLQLSK 9 ++NL QLS+ Sbjct: 373 YINLRQLSE 381>XP_006715067 Length = 4707 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FVNLLQLSK 9 ++NL++LSK Sbjct: 4025 WLNLVELSK 4033>XP_005248319 Length = 4609 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FVNLLQLSK 9 ++NL++LSK Sbjct: 3928 WLNLVELSK 3936Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.143 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 341,166 Number of extensions: 349 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |