Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 299 NP_001075109 20 299 NP_008995 17 4312 NP_001019831 17 4312 NP_009049 17 4312 NP_065871 17 4312 NP_079446 17 4312 NP_079146 17 4312 NP_699197 17 4312 NP_001077005 17 4312 NP_149077 17 4312 NP_001273922 17 4312 XP_006714558 17 4312 XP_006713877 17 4312 XP_006713876 17 4312 XP_006713875 17 4312 XP_006713874 17 4312 XP_006713873 17 4312 NP_001160135 16 5631 XP_005260020 16 5631 NP_060152 16 5631 NP_006414 16 7355 NP_003349 15 9605 XP_005252243 15 9605>NP_008835 Length = 4128 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FVFESLVIY 9 FVFE+LVIY Sbjct: 1099 FVFEALVIY 1107>NP_001075109 Length = 4097 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FVFESLVIY 9 FVFE+LVIY Sbjct: 1099 FVFEALVIY 1107>NP_008995 Length = 1289 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 451 FLFEQIVIF 459>NP_001019831 Length = 2986 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 2148 FLFEQIVIF 2156>NP_009049 Length = 3097 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 2189 FLFEQIVIF 2197>NP_065871 Length = 1659 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 FVFESLVIY 9 F+F++L++Y Sbjct: 292 FLFDNLLVY 300>NP_079446 Length = 979 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 FVFESLVIY 9 F+F++L++Y Sbjct: 266 FLFDNLLVY 274>NP_079146 Length = 1606 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 FVFESLVIY 9 F+F++L++Y Sbjct: 266 FLFDNLLVY 274>NP_699197 Length = 3571 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVFESLVIY 9 + FES +IY Sbjct: 3257 YTFESTIIY 3265>NP_001077005 Length = 725 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+F S+++Y Sbjct: 393 FLFNSMILY 401>NP_149077 Length = 725 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+F S+++Y Sbjct: 393 FLFNSMILY 401>NP_001273922 Length = 724 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+F S+++Y Sbjct: 393 FLFNSMILY 401>XP_006714558 Length = 2612 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 1704 FLFEQIVIF 1712>XP_006713877 Length = 2956 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 2118 FLFEQIVIF 2126>XP_006713876 Length = 2966 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 2128 FLFEQIVIF 2136>XP_006713875 Length = 2975 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 2137 FLFEQIVIF 2145>XP_006713874 Length = 2979 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 2141 FLFEQIVIF 2149>XP_006713873 Length = 2988 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FVFESLVIY 9 F+FE +VI+ Sbjct: 2150 FLFEQIVIF 2158>NP_001160135 Length = 370 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FVFESLV 7 FVFESL+ Sbjct: 124 FVFESLL 130>XP_005260020 Length = 509 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 FESLVIY 9 FE LVIY Sbjct: 62 FEKLVIY 68>NP_060152 Length = 509 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 FESLVIY 9 FE LVIY Sbjct: 62 FEKLVIY 68>NP_006414 Length = 185 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVFESLVIY 9 FVF L++Y Sbjct: 80 FVFLGLILY 88>NP_003349 Length = 394 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVFESLVIY 9 F+ ES+ IY Sbjct: 354 FIRESMTIY 362>XP_005252243 Length = 266 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FVFESLVIY 9 F+ ES+ IY Sbjct: 226 FIRESMTIY 234Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.347 0.161 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 336,813 Number of extensions: 641 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |