Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 20 299 NP_001263689 20 299 NP_001119584 20 299 NP_001119590 20 299 NP_001263690 20 299 NP_001119587 20 299 NP_001263626 20 299 NP_114480 16 5631 NP_114481 16 5631 NP_061737 16 5631 XP_005252109 16 5631 NP_056261 16 7355 NP_536859 16 7355 XP_005250923 16 7355 XP_005272300 16 7355 XP_006713913 16 7355 XP_006711822 16 7355 XP_006711821 16 7355 NP_055194 16 7355 NP_001269356 15 9605 NP_001269355 15 9605 NP_002640 15 9605 NP_689969 15 9605 NP_001272368 15 9605 NP_031361 15 9605 NP_005638 15 9605 NP_001035100 15 9605 NP_001561 15 9605 NP_001399 15 9605 XP_005260183 15 9605 XP_006720934 15 9605 XP_006716090 15 9605 XP_005250500 15 9605 XP_006714526 15 9605 XP_005265687 15 9605 XP_006710468 15 9605 XP_005270637 15 9605 NP_001132938 15 9605 NP_149014 15 9605>NP_000537 Length = 393 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FTLRIRGRE 9 FTL+IRGRE Sbjct: 328 FTLQIRGRE 336>NP_001263689 Length = 354 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FTLRIRGRE 9 FTL+IRGRE Sbjct: 289 FTLQIRGRE 297>NP_001119584 Length = 393 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FTLRIRGRE 9 FTL+IRGRE Sbjct: 328 FTLQIRGRE 336>NP_001119590 Length = 354 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FTLRIRGRE 9 FTL+IRGRE Sbjct: 289 FTLQIRGRE 297>NP_001263690 Length = 354 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FTLRIRGRE 9 FTL+IRGRE Sbjct: 289 FTLQIRGRE 297>NP_001119587 Length = 261 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FTLRIRGRE 9 FTL+IRGRE Sbjct: 196 FTLQIRGRE 204>NP_001263626 Length = 234 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FTLRIRGRE 9 FTL+IRGRE Sbjct: 169 FTLQIRGRE 177>NP_114480 Length = 837 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FTLRIRGR 8 F+L++RGR Sbjct: 179 FSLQLRGR 186>NP_114481 Length = 750 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FTLRIRGR 8 F+L++RGR Sbjct: 179 FSLQLRGR 186>NP_061737 Length = 935 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FTLRIRGR 8 F+L++RGR Sbjct: 179 FSLQLRGR 186>XP_005252109 Length = 448 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FTLRIRGRE 9 +TLR +GRE Sbjct: 29 WTLRKKGRE 37>NP_056261 Length = 2275 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RIRGRE 9 R+RGRE Sbjct: 1946 RVRGRE 1951>NP_536859 Length = 624 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 TLRIRGR 8 TLR RGR Sbjct: 616 TLRTRGR 622>XP_005250923 Length = 500 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LRIRGRE 9 LR++GRE Sbjct: 480 LRLKGRE 486>XP_005272300 Length = 395 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FTLRIRGRE 9 +TLR GRE Sbjct: 2 WTLRATGRE 10>XP_006713913 Length = 449 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FTLRIRGRE 9 +TLR GRE Sbjct: 2 WTLRATGRE 10>XP_006711822 Length = 2266 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RIRGRE 9 R+RGRE Sbjct: 1937 RVRGRE 1942>XP_006711821 Length = 2301 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RIRGRE 9 R+RGRE Sbjct: 1972 RVRGRE 1977>NP_055194 Length = 500 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LRIRGRE 9 LR++GRE Sbjct: 480 LRLKGRE 486>NP_001269356 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FTLRIRGRE 9 F LR+ GR+ Sbjct: 270 FVLRVCGRD 278>NP_001269355 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FTLRIRGRE 9 F LR+ GR+ Sbjct: 270 FVLRVCGRD 278>NP_002640 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FTLRIRGRE 9 F LR+ GR+ Sbjct: 270 FVLRVCGRD 278>NP_689969 Length = 1708 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LRIRGR 8 LR+RGR Sbjct: 13 LRVRGR 18>NP_001272368 Length = 1732 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LRIRGR 8 LR+RGR Sbjct: 13 LRVRGR 18>NP_031361 Length = 1755 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TLRIRGR 8 TLR+RG+ Sbjct: 1736 TLRLRGQ 1742>NP_005638 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RIRGRE 9 R+RGRE Sbjct: 30 RLRGRE 35>NP_001035100 Length = 235 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 FTLRIR 6 FTLR+R Sbjct: 45 FTLRVR 50>NP_001561 Length = 625 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RIRGRE 9 R+RGRE Sbjct: 502 RLRGRE 507>NP_001399 Length = 2923 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 FTLRIRGRE 9 +TLR+R ++ Sbjct: 470 YTLRVRAQD 478>XP_005260183 Length = 668 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RIRGRE 9 R+RGRE Sbjct: 12 RLRGRE 17>XP_006720934 Length = 296 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 FTLRIR 6 FTLR+R Sbjct: 29 FTLRVR 34>XP_006716090 Length = 878 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FTLRIRGRE 9 F LR+ GR+ Sbjct: 270 FVLRVCGRD 278>XP_005250500 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FTLRIRGRE 9 F LR+ GR+ Sbjct: 270 FVLRVCGRD 278>XP_006714526 Length = 1670 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LRIRGR 8 LR+RGR Sbjct: 13 LRVRGR 18>XP_005265687 Length = 1758 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TLRIRGR 8 TLR+RG+ Sbjct: 1739 TLRLRGQ 1745>XP_006710468 Length = 2916 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 FTLRIRGRE 9 +TLR+R ++ Sbjct: 470 YTLRVRAQD 478>XP_005270637 Length = 2921 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 FTLRIRGRE 9 +TLR+R ++ Sbjct: 470 YTLRVRAQD 478>NP_001132938 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RIRGRE 9 R+RGRE Sbjct: 30 RLRGRE 35>NP_149014 Length = 735 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 RIRGRE 9 R+RGRE Sbjct: 12 RLRGRE 17Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.341 0.157 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 463,889 Number of extensions: 830 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |