Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 NP_653226 17 3301 NP_001271457 17 3301 NP_001271456 17 3301 NP_060280 17 3301 NP_001271458 17 3301 XP_005255463 17 3301 XP_006720964 17 3301 XP_005255461 17 3301 XP_005255460 17 3301 XP_005255459 17 3301 XP_006711799 17 3301 NP_060336 16 5631 XP_005250316 16 7355 NP_036304 16 7355 NP_001156971 16 7355 NP_277041 16 7355 NP_071407 15 9605 NP_001178249 15 9605 NP_001265560 15 9605 NP_001178250 15 9605 NP_068712 15 9605 NP_000805 15 9605 XP_006718005 15 9605 XP_006718004 15 9605 XP_006718003 15 9605 XP_005275746 15 9605 XP_003403671 15 9605 XP_006710003 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FTKNSAVST 9 FTKNS VST Sbjct: 379 FTKNSVVST 387>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FTKNSAVST 9 FTKNS VST Sbjct: 174 FTKNSVVST 182>NP_653226 Length = 1081 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTK+SA+S Sbjct: 810 FTKHSAIS 817>NP_001271457 Length = 408 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 381 FTKNSALT 388>NP_001271456 Length = 697 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 670 FTKNSALT 677>NP_060280 Length = 485 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 458 FTKNSALT 465>NP_001271458 Length = 408 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 381 FTKNSALT 388>XP_005255463 Length = 485 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 458 FTKNSALT 465>XP_006720964 Length = 485 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 458 FTKNSALT 465>XP_005255461 Length = 487 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 460 FTKNSALT 467>XP_005255460 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 583 FTKNSALT 590>XP_005255459 Length = 624 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTKNSA++ Sbjct: 597 FTKNSALT 604>XP_006711799 Length = 1091 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FTK+SA+S Sbjct: 820 FTKHSAIS 827>NP_060336 Length = 260 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FTKNSAVS 8 FT+N+A+S Sbjct: 126 FTQNNAIS 133>XP_005250316 Length = 561 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FTKNSAVST 9 F KN+ VST Sbjct: 195 FLKNALVST 203>NP_036304 Length = 618 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FTKNSAVST 9 F KN+ VST Sbjct: 195 FLKNALVST 203>NP_001156971 Length = 568 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FTKNSAVST 9 F KN+ VST Sbjct: 145 FLKNALVST 153>NP_277041 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FTKNSAVST 9 F KN+ VST Sbjct: 157 FLKNALVST 165>NP_071407 Length = 3354 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FTKNSAVS 8 FT +SAVS Sbjct: 1420 FTSDSAVS 1427>NP_001178249 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TKNSAVS 8 T+NSA+S Sbjct: 303 TRNSAIS 309>NP_001265560 Length = 388 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TKNSAVS 8 T+NSA+S Sbjct: 303 TRNSAIS 309>NP_001178250 Length = 402 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TKNSAVS 8 T+NSA+S Sbjct: 317 TRNSAIS 323>NP_068712 Length = 473 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TKNSAVS 8 T+NSA+S Sbjct: 388 TRNSAIS 394>NP_000805 Length = 473 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TKNSAVS 8 T+NSA+S Sbjct: 388 TRNSAIS 394>XP_006718005 Length = 3397 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FTKNSAVS 8 FT +SAVS Sbjct: 1463 FTSDSAVS 1470>XP_006718004 Length = 3399 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FTKNSAVS 8 FT +SAVS Sbjct: 1465 FTSDSAVS 1472>XP_006718003 Length = 3419 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FTKNSAVS 8 FT +SAVS Sbjct: 1485 FTSDSAVS 1492>XP_005275746 Length = 3352 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FTKNSAVS 8 FT +SAVS Sbjct: 1418 FTSDSAVS 1425>XP_003403671 Length = 3354 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FTKNSAVS 8 FT +SAVS Sbjct: 1420 FTSDSAVS 1427>XP_006710003 Length = 3374 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FTKNSAVS 8 FT +SAVS Sbjct: 1440 FTSDSAVS 1447Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.104 0.252 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 333,050 Number of extensions: 288 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |