Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_037536 18 1482 NP_005814 18 1482 NP_001170826 18 1482 XP_005255091 18 1482 XP_006720900 18 1482 XP_006720899 18 1482 NP_001727 15 9605 NP_766638 15 9605 XP_005261809 15 9605 XP_005259247 15 9605>NP_037536 Length = 630 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TFMTLRTD 9 TFM LRTD Sbjct: 530 TFMKLRTD 537>NP_005814 Length = 622 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TFMTLRTD 9 TFM LRTD Sbjct: 522 TFMKLRTD 529>NP_001170826 Length = 622 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TFMTLRTD 9 TFM LRTD Sbjct: 522 TFMKLRTD 529>XP_005255091 Length = 621 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TFMTLRTD 9 TFM LRTD Sbjct: 521 TFMKLRTD 528>XP_006720900 Length = 622 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TFMTLRTD 9 TFM LRTD Sbjct: 522 TFMKLRTD 529>XP_006720899 Length = 622 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 TFMTLRTD 9 TFM LRTD Sbjct: 522 TFMKLRTD 529>NP_001727 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FTFMTLRT 8 +TF+ LRT Sbjct: 222 YTFILLRT 229>NP_766638 Length = 988 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TFMTLRTD 9 TF+TL+ D Sbjct: 522 TFVTLKCD 529>XP_005261809 Length = 1018 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TFMTLRTD 9 TF+TL+ D Sbjct: 552 TFVTLKCD 559>XP_005259247 Length = 231 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FTFMTLRT 8 +TF+ LRT Sbjct: 103 YTFILLRT 110Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.145 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 348,132 Number of extensions: 356 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |