Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 509 XP_005262424 20 509 XP_005267581 17 4312 NP_001273331 16 5631 NP_000237 16 5631 NP_003254 16 5631 NP_001159588 16 5631 NP_003266 16 5631 XP_006720946 16 5631 XP_005255380 16 5631 XP_006720945 16 5631 XP_006720944 16 5631 XP_005255378 16 5631 XP_005255377 16 5631 XP_006720943 16 5631 XP_005262723 16 5631 XP_005262722 16 5631 XP_006714091 16 5631 XP_005262720 16 5631 XP_005262719 16 5631 NP_056004 16 7355 XP_006712033 16 7355 XP_005264280 16 7355 NP_008851 15 9605 NP_001189364 15 9605 NP_001159436 15 9605 NP_001159435 15 9605 NP_002438 15 9605 NP_001231866 15 9605 NP_005087 15 9605 NP_036292 15 9605 NP_001265645 15 9605 NP_660152 15 9605 NP_001164634 15 9605 NP_001164633 15 9605 NP_963893 15 9605 XP_005262367 15 9605 XP_006724778 15 9605 XP_005262366 15 9605 XP_005266987 15 9605 XP_006715521 15 9605 XP_005265227 15 9605>NP_722576 Length = 3080 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSVLGTRMT 9 F VLGTRMT Sbjct: 1863 FPVLGTRMT 1871>XP_005262424 Length = 2875 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSVLGTRMT 9 F VLGTRMT Sbjct: 1658 FPVLGTRMT 1666>XP_005267581 Length = 509 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FSVLGTRM 8 FS+LGT M Sbjct: 7 FSLLGTEM 14>NP_001273331 Length = 1131 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 835 SFLGTRLT 842>NP_000237 Length = 1130 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 834 SFLGTRLT 841>NP_003254 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FSVLGTRM 8 F+V GTRM Sbjct: 331 FTVSGTRM 338>NP_001159588 Length = 359 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 FSVLGTR 7 FS++GTR Sbjct: 229 FSIVGTR 235>NP_003266 Length = 359 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 FSVLGTR 7 FS++GTR Sbjct: 229 FSIVGTR 235>XP_006720946 Length = 1081 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 785 SFLGTRLT 792>XP_005255380 Length = 1082 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 786 SFLGTRLT 793>XP_006720945 Length = 1096 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 800 SFLGTRLT 807>XP_006720944 Length = 1097 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 801 SFLGTRLT 808>XP_005255378 Length = 1145 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 849 SFLGTRLT 856>XP_005255377 Length = 1146 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 850 SFLGTRLT 857>XP_006720943 Length = 1208 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 912 SFLGTRLT 919>XP_005262723 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FSVLGTRM 8 F+V GTRM Sbjct: 331 FTVSGTRM 338>XP_005262722 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FSVLGTRM 8 F+V GTRM Sbjct: 331 FTVSGTRM 338>XP_006714091 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FSVLGTRM 8 F+V GTRM Sbjct: 331 FTVSGTRM 338>XP_005262720 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FSVLGTRM 8 F+V GTRM Sbjct: 331 FTVSGTRM 338>XP_005262719 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FSVLGTRM 8 F+V GTRM Sbjct: 331 FTVSGTRM 338>NP_056004 Length = 811 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FSVLGTRMT 9 +SVLG R T Sbjct: 302 YSVLGARET 310>XP_006712033 Length = 673 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FSVLGTRMT 9 +SVLG R T Sbjct: 160 YSVLGARET 168>XP_005264280 Length = 815 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FSVLGTRMT 9 +SVLG R T Sbjct: 302 YSVLGARET 310>NP_008851 Length = 1998 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FSVLGTRMT 9 FS+ G R+T Sbjct: 536 FSIEGNRLT 544>NP_001189364 Length = 2009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FSVLGTRMT 9 FS+ G R+T Sbjct: 536 FSIEGNRLT 544>NP_001159436 Length = 1981 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FSVLGTRMT 9 FS+ G R+T Sbjct: 536 FSIEGNRLT 544>NP_001159435 Length = 2009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FSVLGTRMT 9 FS+ G R+T Sbjct: 536 FSIEGNRLT 544>NP_002438 Length = 1400 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 180 SPLGTRVT 187>NP_001231866 Length = 1351 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 180 SPLGTRVT 187>NP_005087 Length = 1370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S +GT+MT Sbjct: 303 SAVGTKMT 310>NP_036292 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 VLGTRM 8 +LGTRM Sbjct: 566 ILGTRM 571>NP_001265645 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 VLGTRM 8 +LGTRM Sbjct: 566 ILGTRM 571>NP_660152 Length = 159 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 FSVLGT 6 FS+LGT Sbjct: 47 FSILGT 52>NP_001164634 Length = 495 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S +GT+MT Sbjct: 303 SAVGTKMT 310>NP_001164633 Length = 1358 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S +GT+MT Sbjct: 303 SAVGTKMT 310>NP_963893 Length = 1370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S +GT+MT Sbjct: 303 SAVGTKMT 310>XP_005262367 Length = 1358 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S +GT+MT Sbjct: 303 SAVGTKMT 310>XP_006724778 Length = 1370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S +GT+MT Sbjct: 303 SAVGTKMT 310>XP_005262366 Length = 1370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S +GT+MT Sbjct: 303 SAVGTKMT 310>XP_005266987 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 VLGTRM 8 +LGTRM Sbjct: 542 ILGTRM 547>XP_006715521 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 VLGTRM 8 +LGTRM Sbjct: 566 ILGTRM 571>XP_005265227 Length = 1401 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SVLGTRMT 9 S LGTR+T Sbjct: 180 SPLGTRVT 187Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 396,962 Number of extensions: 535 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |