Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004351 20 390 NP_653267 17 4312 NP_005492 16 5631 NP_079350 16 5631 NP_002195 16 5631 XP_005257365 16 5631 XP_006714380 16 5631 XP_006714379 16 5631 XP_006714378 16 5631 XP_006714377 16 5631 NP_872384 16 7355 NP_001265473 16 7355 NP_000057 16 7355 NP_001265472 16 7355 XP_005248250 16 7355 XP_005245152 16 7355 XP_005271223 16 7355 XP_006710936 16 7355 NP_444270 16 7355 NP_001175 15 9605 NP_996895 15 9605 NP_036227 15 9605 NP_056127 15 9605 NP_002421 15 9605 NP_115270 15 9605 XP_006717827 15 9605 XP_006717826 15 9605 XP_006714407 15 9605 XP_006714406 15 9605 XP_006714405 15 9605 XP_005263349 15 9605 XP_005263348 15 9605 XP_005263347 15 9605 XP_005263346 15 9605 XP_005263345 15 9605 XP_005263344 15 9605 XP_005263343 15 9605 XP_005263342 15 9605 XP_005263341 15 9605 XP_005263340 15 9605 XP_005263339 15 9605>NP_004351 Length = 882 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FSLNTRFKV 9 FSL+TRFKV Sbjct: 69 FSLDTRFKV 77>NP_653267 Length = 4753 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LNTRFKV 9 LN+RFKV Sbjct: 1284 LNSRFKV 1290>NP_005492 Length = 1066 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FSLNTRFKV 9 F+L+TRF V Sbjct: 33 FNLDTRFLV 41>NP_079350 Length = 4012 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FSLNTRFKV 9 +SLNT F++ Sbjct: 3660 YSLNTEFQL 3668>NP_002195 Length = 1051 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FSLNTRFKV 9 F+L+TRF V Sbjct: 33 FNLDTRFLV 41>XP_005257365 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FSLNTRFKV 9 F+L+TRF V Sbjct: 33 FNLDTRFLV 41>XP_006714380 Length = 3897 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FSLNTRFKV 9 +SLNT F++ Sbjct: 3545 YSLNTEFQL 3553>XP_006714379 Length = 3936 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FSLNTRFKV 9 +SLNT F++ Sbjct: 3584 YSLNTEFQL 3592>XP_006714378 Length = 3965 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FSLNTRFKV 9 +SLNT F++ Sbjct: 3613 YSLNTEFQL 3621>XP_006714377 Length = 4010 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FSLNTRFKV 9 +SLNT F++ Sbjct: 3658 YSLNTEFQL 3666>NP_872384 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLNTRFK 8 SLN RFK Sbjct: 185 SLNIRFK 191>NP_001265473 Length = 529 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 + LNTRF+ Sbjct: 142 YILNTRFR 149>NP_000057 Length = 591 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 + LNTRF+ Sbjct: 204 YILNTRFR 211>NP_001265472 Length = 539 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 + LNTRF+ Sbjct: 152 YILNTRFR 159>XP_005248250 Length = 1074 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SLNTRFKV 9 S+N++FKV Sbjct: 120 SVNSKFKV 127>XP_005245152 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SLNTRFK 8 SLN RFK Sbjct: 185 SLNIRFK 191>XP_005271223 Length = 628 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 + LNTRF+ Sbjct: 241 YILNTRFR 248>XP_006710936 Length = 630 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 + LNTRF+ Sbjct: 243 YILNTRFR 250>NP_444270 Length = 1074 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SLNTRFKV 9 S+N++FKV Sbjct: 120 SVNSKFKV 127>NP_001175 Length = 2644 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LNTRFK 8 LNTR+K Sbjct: 1458 LNTRYK 1463>NP_996895 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SLNTRFKV 9 SLN +FK+ Sbjct: 372 SLNIQFKI 379>NP_036227 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SLNTRFKV 9 SLN +FK+ Sbjct: 372 SLNIQFKI 379>NP_056127 Length = 5005 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3155 YSLNLQFK 3162>NP_002421 Length = 1320 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SLNTRFK 8 S+NT FK Sbjct: 29 SMNTHFK 35>NP_115270 Length = 818 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FSLNTRFKV 9 FSL T+F V Sbjct: 808 FSLPTQFSV 816>XP_006717827 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SLNTRFKV 9 SLN +FK+ Sbjct: 372 SLNIQFKI 379>XP_006717826 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SLNTRFKV 9 SLN +FK+ Sbjct: 372 SLNIQFKI 379>XP_006714407 Length = 5004 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3154 YSLNLQFK 3161>XP_006714406 Length = 3680 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3155 YSLNLQFK 3162>XP_006714405 Length = 4103 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 2232 YSLNLQFK 2239>XP_005263349 Length = 4410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 2539 YSLNLQFK 2546>XP_005263348 Length = 4443 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 2572 YSLNLQFK 2579>XP_005263347 Length = 4640 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3155 YSLNLQFK 3162>XP_005263346 Length = 4983 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3112 YSLNLQFK 3119>XP_005263345 Length = 4991 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3155 YSLNLQFK 3162>XP_005263344 Length = 5005 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3155 YSLNLQFK 3162>XP_005263343 Length = 5009 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3138 YSLNLQFK 3145>XP_005263342 Length = 5025 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3154 YSLNLQFK 3161>XP_005263341 Length = 5026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3155 YSLNLQFK 3162>XP_005263340 Length = 5026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3155 YSLNLQFK 3162>XP_005263339 Length = 5026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSLNTRFK 8 +SLN +FK Sbjct: 3155 YSLNLQFK 3162Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.142 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 365,103 Number of extensions: 552 Number of successful extensions: 41 Number of sequences better than 10000.0: 41 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 41 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |