Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_005264851 16 5631 XP_005264850 16 5631 XP_006712984 16 5631 XP_005264847 16 5631 NP_077008 16 7355 NP_055486 16 7355 XP_006722947 16 7355 XP_005249622 16 7355 XP_005249621 16 7355 NP_001252516 15 9605 NP_001020775 15 9605>XP_005264851 Length = 163 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SVGVSAS 9 SVGVSAS Sbjct: 102 SVGVSAS 108>XP_005264850 Length = 171 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SVGVSAS 9 SVGVSAS Sbjct: 110 SVGVSAS 116>XP_006712984 Length = 279 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SVGVSAS 9 SVGVSAS Sbjct: 260 SVGVSAS 266>XP_005264847 Length = 321 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SVGVSAS 9 SVGVSAS Sbjct: 260 SVGVSAS 266>NP_077008 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FRSVGVSAS 9 FR++G+S S Sbjct: 106 FRALGISIS 114>NP_055486 Length = 1083 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FRSVGVSAS 9 F+S+GV+ S Sbjct: 576 FQSIGVTTS 584>XP_006722947 Length = 412 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FRSVGVSAS 9 FR++G+S S Sbjct: 106 FRALGISIS 114>XP_005249622 Length = 1021 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FRSVGVSAS 9 F+S+GV+ S Sbjct: 576 FQSIGVTTS 584>XP_005249621 Length = 1058 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FRSVGVSAS 9 F+S+GV+ S Sbjct: 551 FQSIGVTTS 559>NP_001252516 Length = 157 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 FRSVGVS 7 F+SVG+S Sbjct: 88 FQSVGIS 94>NP_001020775 Length = 402 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RSVGVSA 8 RSVGV+A Sbjct: 60 RSVGVNA 66Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.124 0.311 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 351,058 Number of extensions: 331 Number of successful extensions: 11 Number of sequences better than 10000.0: 11 Number of HSP's gapped: 11 Number of HSP's successfully gapped: 11 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |