Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 21 229 NP_001075109 21 229 NP_001091681 18 1135 NP_001091683 18 1135 NP_001091682 18 1135 NP_000852 18 1135 NP_057331 17 4312 NP_005106 16 5631 NP_059447 16 5631 NP_000821 16 5631 NP_783300 16 5631 NP_996806 16 5631 XP_005261001 16 5631 XP_005261000 16 5631 XP_005260999 16 5631 XP_006724054 16 5631 NP_997244 16 7355 NP_110447 16 7355 NP_001161707 16 7355 XP_006715287 16 7355 XP_006715286 16 7355 NP_060606 15 9605 NP_000113 15 9605 NP_001193775 15 9605 NP_001269109 15 9605 NP_954646 15 9605 NP_620132 15 9605 NP_001166983 15 9605 NP_006237 15 9605 NP_001269111 15 9605 NP_001269110 15 9605 NP_001269108 15 9605 NP_001073949 15 9605 XP_006717381 15 9605 XP_005252359 15 9605 XP_006715063 15 9605 XP_006715062 15 9605 XP_005263675 15 9605>NP_008835 Length = 4128 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FRDYVAVSR 9 FRDYVAV+R Sbjct: 4074 FRDYVAVAR 4082>NP_001075109 Length = 4097 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FRDYVAVSR 9 FRDYVAV+R Sbjct: 4043 FRDYVAVAR 4051>NP_001091681 Length = 487 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RDYVAVSR 9 RDYVAV+R Sbjct: 319 RDYVAVNR 326>NP_001091683 Length = 487 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RDYVAVSR 9 RDYVAV+R Sbjct: 319 RDYVAVNR 326>NP_001091682 Length = 487 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RDYVAVSR 9 RDYVAV+R Sbjct: 319 RDYVAVNR 326>NP_000852 Length = 487 Score = 18.5 bits (36), Expect = 1135 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RDYVAVSR 9 RDYVAV+R Sbjct: 319 RDYVAVNR 326>NP_057331 Length = 1241 Score = 16.5 bits (31), Expect = 4312 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 FRDYVA 6 FRDY+A Sbjct: 354 FRDYIA 359>NP_005106 Length = 893 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 FRD+ VSR Sbjct: 235 FRDFRGVSR 243>NP_059447 Length = 893 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 FRD+ VSR Sbjct: 235 FRDFRGVSR 243>NP_000821 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 + DY A+SR Sbjct: 151 YPDYAAISR 159>NP_783300 Length = 905 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 + DY A+SR Sbjct: 151 YPDYAAISR 159>NP_996806 Length = 372 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 FRDY A+ + Sbjct: 265 FRDYAAMRK 273>XP_005261001 Length = 903 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 + DY A+SR Sbjct: 151 YPDYAAISR 159>XP_005261000 Length = 920 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 + DY A+SR Sbjct: 151 YPDYAAISR 159>XP_005260999 Length = 934 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 + DY A+SR Sbjct: 151 YPDYAAISR 159>XP_006724054 Length = 949 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FRDYVAVSR 9 + DY A+SR Sbjct: 151 YPDYAAISR 159>NP_997244 Length = 3169 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 DYVAVSR 9 DYV +SR Sbjct: 2060 DYVGISR 2066>NP_110447 Length = 957 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 DYVAVSR 9 DY+A+S+ Sbjct: 196 DYIAISK 202>NP_001161707 Length = 2139 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 DYVAVSR 9 DYV +SR Sbjct: 2063 DYVGISR 2069>XP_006715287 Length = 615 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 DYVAVSR 9 DY+A+S+ Sbjct: 196 DYIAISK 202>XP_006715286 Length = 945 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 DYVAVSR 9 DY+A+S+ Sbjct: 196 DYIAISK 202>NP_060606 Length = 3477 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 FRDYVAVSR 9 F DY +SR Sbjct: 896 FLDYAKISR 904>NP_000113 Length = 782 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 FRDYVAV 7 +R+YVA+ Sbjct: 519 YREYVAI 525>NP_001193775 Length = 1892 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 FRDYVAVSR 9 F DY +SR Sbjct: 896 FLDYAKISR 904>NP_001269109 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 DYVAVSR 9 DY+ +SR Sbjct: 98 DYITISR 104>NP_954646 Length = 201 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FRDYVAVS 8 FR+Y+A S Sbjct: 15 FRNYLAAS 22>NP_620132 Length = 262 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FRDYVAVS 8 FR+Y+A S Sbjct: 15 FRNYLAAS 22>NP_001166983 Length = 210 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FRDYVAVS 8 FR+Y+A S Sbjct: 15 FRNYLAAS 22>NP_006237 Length = 467 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 DYVAVSR 9 DY+ +SR Sbjct: 98 DYITISR 104>NP_001269111 Length = 391 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 DYVAVSR 9 DY+ +SR Sbjct: 22 DYITISR 28>NP_001269110 Length = 391 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 DYVAVSR 9 DY+ +SR Sbjct: 22 DYITISR 28>NP_001269108 Length = 467 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 DYVAVSR 9 DY+ +SR Sbjct: 98 DYITISR 104>NP_001073949 Length = 495 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 FRDYVA 6 F+DY+A Sbjct: 203 FKDYIA 208>XP_006717381 Length = 206 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FRDYVAVS 8 FR+Y+A S Sbjct: 36 FRNYLAAS 43>XP_005252359 Length = 283 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FRDYVAVS 8 FR+Y+A S Sbjct: 36 FRNYLAAS 43>XP_006715063 Length = 248 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 FRDYVA 6 F+DY+A Sbjct: 203 FKDYIA 208>XP_006715062 Length = 463 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 1 FRDYVA 6 F+DY+A Sbjct: 171 FKDYIA 176>XP_005263675 Length = 718 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 FRDYVAV 7 +R+YVA+ Sbjct: 455 YREYVAI 461Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.144 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 441,715 Number of extensions: 437 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |