Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000236 20 299 NP_001120972 20 299 XP_006716054 20 299 XP_006716053 20 299 XP_006716052 20 299 XP_006716051 20 299 NP_001129490 17 4312 NP_001278092 17 4312 NP_000111 17 4312 NP_001167560 16 5631 NP_114423 16 5631 NP_001167561 16 5631 XP_005260914 16 5631 XP_005260913 16 5631 NP_071365 16 7355 XP_005260285 16 7355 XP_006723916 16 7355 NP_001074304 16 7355 NP_001005281 15 9605>NP_000236 Length = 1390 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FNMSLIISN 9 FNMS+IISN Sbjct: 634 FNMSIIISN 642>NP_001120972 Length = 1408 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FNMSLIISN 9 FNMS+IISN Sbjct: 634 FNMSIIISN 642>XP_006716054 Length = 960 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FNMSLIISN 9 FNMS+IISN Sbjct: 204 FNMSIIISN 212>XP_006716053 Length = 960 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FNMSLIISN 9 FNMS+IISN Sbjct: 204 FNMSIIISN 212>XP_006716052 Length = 1409 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FNMSLIISN 9 FNMS+IISN Sbjct: 653 FNMSIIISN 661>XP_006716051 Length = 1427 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FNMSLIISN 9 FNMS+IISN Sbjct: 653 FNMSIIISN 661>NP_001129490 Length = 455 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 NMSLIISN 9 NM+L++SN Sbjct: 249 NMALVLSN 256>NP_001278092 Length = 455 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 NMSLIISN 9 NM+L++SN Sbjct: 249 NMALVLSN 256>NP_000111 Length = 455 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 NMSLIISN 9 NM+L++SN Sbjct: 249 NMALVLSN 256>NP_001167560 Length = 875 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FNMSLIIS 8 FN+SL++S Sbjct: 461 FNLSLVMS 468>NP_114423 Length = 891 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FNMSLIIS 8 FN+SL++S Sbjct: 477 FNLSLVMS 484>NP_001167561 Length = 918 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FNMSLIIS 8 FN+SL++S Sbjct: 504 FNLSLVMS 511>XP_005260914 Length = 856 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FNMSLIIS 8 FN+SL++S Sbjct: 442 FNLSLVMS 449>XP_005260913 Length = 998 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 FNMSLIIS 8 FN+SL++S Sbjct: 584 FNLSLVMS 591>NP_071365 Length = 436 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FNMSLIISN 9 FN+ IISN Sbjct: 404 FNLVAIISN 412>XP_005260285 Length = 430 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FNMSLIISN 9 FN+ IISN Sbjct: 398 FNLVAIISN 406>XP_006723916 Length = 456 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FNMSLIISN 9 FN+ IISN Sbjct: 424 FNLVAIISN 432>NP_001074304 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FNMSLIISN 9 FN L++SN Sbjct: 373 FNTCLLVSN 381>NP_001005281 Length = 311 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FNMSLIIS 8 FNM+ IIS Sbjct: 266 FNMNKIIS 273Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.137 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 264,054 Number of extensions: 364 Number of successful extensions: 19 Number of sequences better than 10000.0: 19 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 19 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |