Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 19 869 NP_055832 18 1935 NP_963920 18 1935 NP_963918 18 1935 XP_005270706 18 1935 XP_005270705 18 1935 NP_000777 16 7355 NP_001139624 16 7355 XP_005258567 16 7355 XP_006718900 16 7355 NP_789780 16 7355 NP_783200 15 9605 NP_001193884 15 9605 NP_783302 15 9605 NP_001193885 15 9605 NP_056049 15 9605 NP_001091988 15 9605 NP_003939 15 9605 NP_065923 15 9605 NP_620140 15 9605 XP_005248952 15 9605 XP_005248951 15 9605 XP_005248950 15 9605 XP_005248949 15 9605 XP_006714470 15 9605 XP_006714469 15 9605 XP_005263392 15 9605 XP_005264816 15 9605 XP_005264815 15 9605 XP_005264814 15 9605 XP_006713067 15 9605 XP_006713066 15 9605>NP_002430 Length = 1137 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FMTINVTTL 9 FMTIN TTL Sbjct: 534 FMTINGTTL 542>NP_055832 Length = 942 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FMTINVTTL 9 ++T+N+TTL Sbjct: 102 YLTVNLTTL 110>NP_963920 Length = 828 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FMTINVTTL 9 ++T+N+TTL Sbjct: 102 YLTVNLTTL 110>NP_963918 Length = 911 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FMTINVTTL 9 ++T+N+TTL Sbjct: 71 YLTVNLTTL 79>XP_005270706 Length = 851 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FMTINVTTL 9 ++T+N+TTL Sbjct: 102 YLTVNLTTL 110>XP_005270705 Length = 934 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FMTINVTTL 9 ++T+N+TTL Sbjct: 102 YLTVNLTTL 110>NP_000777 Length = 509 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FMTINVTTL 9 F T+N TT+ Sbjct: 485 FPTVNYTTM 493>NP_001139624 Length = 404 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FMTINVTTL 9 F T+N TT+ Sbjct: 380 FPTVNYTTM 388>XP_005258567 Length = 1036 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FMTINVTTL 9 F T+N+T+L Sbjct: 89 FQTMNLTSL 97>XP_006718900 Length = 673 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TINVTTL 9 T+N+TTL Sbjct: 543 TVNLTTL 549>NP_789780 Length = 1043 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FMTINVTTL 9 F T+N+T+L Sbjct: 89 FQTMNLTSL 97>NP_783200 Length = 1026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 891 TVNVTT 896>NP_001193884 Length = 1026 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 891 TVNVTT 896>NP_783302 Length = 698 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 563 TVNVTT 568>NP_001193885 Length = 697 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 562 TVNVTT 567>NP_056049 Length = 1346 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MTINVTTL 9 ++INVTT+ Sbjct: 103 LSINVTTV 110>NP_001091988 Length = 1346 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MTINVTTL 9 ++INVTT+ Sbjct: 103 LSINVTTV 110>NP_003939 Length = 493 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 INVTTL 9 INVTTL Sbjct: 467 INVTTL 472>NP_065923 Length = 1028 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 893 TVNVTT 898>NP_620140 Length = 330 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 INVTTL 9 INVTTL Sbjct: 45 INVTTL 50>XP_005248952 Length = 1380 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MTINVTTL 9 ++INVTT+ Sbjct: 103 LSINVTTV 110>XP_005248951 Length = 1381 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MTINVTTL 9 ++INVTT+ Sbjct: 103 LSINVTTV 110>XP_005248950 Length = 1386 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MTINVTTL 9 ++INVTT+ Sbjct: 103 LSINVTTV 110>XP_005248949 Length = 1386 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MTINVTTL 9 ++INVTT+ Sbjct: 103 LSINVTTV 110>XP_006714470 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 INVTTL 9 INVTTL Sbjct: 467 INVTTL 472>XP_006714469 Length = 530 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 INVTTL 9 INVTTL Sbjct: 467 INVTTL 472>XP_005263392 Length = 570 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 INVTTL 9 INVTTL Sbjct: 467 INVTTL 472>XP_005264816 Length = 647 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 512 TVNVTT 517>XP_005264815 Length = 923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 788 TVNVTT 793>XP_005264814 Length = 1028 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 893 TVNVTT 898>XP_006713067 Length = 1025 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 890 TVNVTT 895>XP_006713066 Length = 1032 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 TINVTT 8 T+NVTT Sbjct: 897 TVNVTT 902Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.336 0.137 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 250,033 Number of extensions: 243 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |