Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_061836 19 869 NP_387505 19 869 XP_005261051 19 869 NP_722576 18 1935 NP_065861 15 9605 NP_001879 15 9605 NP_001070993 15 9605 NP_001258604 15 9605 NP_787036 15 9605 NP_787034 15 9605 NP_787033 15 9605 NP_055642 15 9605 NP_001014444 15 9605 NP_001257620 15 9605 NP_071930 15 9605 XP_006723641 15 9605 XP_005267973 15 9605 XP_005265457 15 9605 XP_006711736 15 9605 XP_005245701 15 9605 XP_005245700 15 9605 NP_001070994 15 9605>NP_061836 Length = 2320 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FLKIESSE 8 FLKIESSE Sbjct: 1750 FLKIESSE 1757>NP_387505 Length = 2269 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FLKIESSE 8 FLKIESSE Sbjct: 1750 FLKIESSE 1757>XP_005261051 Length = 2242 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FLKIESSE 8 FLKIESSE Sbjct: 1672 FLKIESSE 1679>NP_722576 Length = 3080 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FLKIESSEV 9 FLK ESSEV Sbjct: 163 FLKNESSEV 171>NP_065861 Length = 509 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FLKIESSEV 9 FLK+ES + Sbjct: 16 FLKLESHSI 24>NP_001879 Length = 314 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 FLKIESSEV 9 FLK SSEV Sbjct: 130 FLKPPSSEV 138>NP_001070993 Length = 650 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 FL+ ESSE Sbjct: 91 FLEYESSE 98>NP_001258604 Length = 805 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKIESSE 8 +K+ESSE Sbjct: 139 MKVESSE 145>NP_787036 Length = 532 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 +LK+ES E Sbjct: 201 YLKVESCE 208>NP_787034 Length = 502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 +LK+ES E Sbjct: 201 YLKVESCE 208>NP_787033 Length = 555 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 +LK+ES E Sbjct: 201 YLKVESCE 208>NP_055642 Length = 810 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKIESSE 8 +K+ESSE Sbjct: 139 MKVESSE 145>NP_001014444 Length = 272 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 FLKIESSEV 9 FLK SSEV Sbjct: 88 FLKPPSSEV 96>NP_001257620 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 +LK+ES E Sbjct: 201 YLKVESCE 208>NP_071930 Length = 538 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 FL+ ESSE Sbjct: 91 FLEYESSE 98>XP_006723641 Length = 555 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 +LK+ES E Sbjct: 201 YLKVESCE 208>XP_005267973 Length = 537 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FLKIESSEV 9 FLK+ES + Sbjct: 44 FLKLESHSI 52>XP_005265457 Length = 625 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 FL+ ESSE Sbjct: 91 FLEYESSE 98>XP_006711736 Length = 810 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKIESSE 8 +K+ESSE Sbjct: 139 MKVESSE 145>XP_005245701 Length = 810 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKIESSE 8 +K+ESSE Sbjct: 139 MKVESSE 145>XP_005245700 Length = 810 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LKIESSE 8 +K+ESSE Sbjct: 139 MKVESSE 145>NP_001070994 Length = 598 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLKIESSE 8 FL+ ESSE Sbjct: 91 FLEYESSE 98Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.311 0.130 0.300 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 294,716 Number of extensions: 242 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |