Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000072 16 5631 NP_689417 16 5631 XP_006720248 16 5631 XP_005267848 16 5631 XP_005273087 16 5631 XP_006711794 16 5631 XP_005273086 16 5631 XP_005273085 16 5631 XP_005273084 16 5631 NP_060413 16 5631 NP_001240781 15 9605 NP_006585 15 9605 NP_001240782 15 9605 NP_001006623 15 9605 NP_001138767 15 9605 NP_839955 15 9605 NP_001020095 15 9605 XP_005265807 15 9605 XP_006714105 15 9605 XP_005265805 15 9605 XP_005265804 15 9605 XP_005265374 15 9605 XP_005270439 15 9605 XP_005270438 15 9605 NP_060731 15 9605>NP_000072 Length = 3801 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FLIMIKLFR 9 F+I+ KLFR Sbjct: 995 FMIIQKLFR 1003>NP_689417 Length = 711 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 IM+K+FR Sbjct: 582 IMVKIFR 588>XP_006720248 Length = 711 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 IM+K+FR Sbjct: 582 IMVKIFR 588>XP_005267848 Length = 711 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 IM+K+FR Sbjct: 582 IMVKIFR 588>XP_005273087 Length = 2788 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FLIMIKLFR 9 F+I+ KLFR Sbjct: 995 FMIIQKLFR 1003>XP_006711794 Length = 3022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FLIMIKLFR 9 F+I+ KLFR Sbjct: 216 FMIIQKLFR 224>XP_005273086 Length = 3264 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FLIMIKLFR 9 F+I+ KLFR Sbjct: 995 FMIIQKLFR 1003>XP_005273085 Length = 3755 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FLIMIKLFR 9 F+I+ KLFR Sbjct: 995 FMIIQKLFR 1003>XP_005273084 Length = 3801 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FLIMIKLFR 9 F+I+ KLFR Sbjct: 995 FMIIQKLFR 1003>NP_060413 Length = 711 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 IM+K+FR Sbjct: 582 IMVKIFR 588>NP_001240781 Length = 739 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLIMIKLF 8 FLI+ K+F Sbjct: 259 FLILAKMF 266>NP_006585 Length = 739 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLIMIKLF 8 FLI+ K+F Sbjct: 259 FLILAKMF 266>NP_001240782 Length = 640 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLIMIKLF 8 FLI+ K+F Sbjct: 160 FLILAKMF 167>NP_001006623 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 LIMIKLF 8 ++M+KLF Sbjct: 221 IVMVKLF 227>NP_001138767 Length = 558 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLIMIKLF 8 FL+ +KLF Sbjct: 547 FLVPLKLF 554>NP_839955 Length = 879 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 +MIK+FR Sbjct: 567 MMIKIFR 573>NP_001020095 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 +MIK+FR Sbjct: 582 MMIKIFR 588>XP_005265807 Length = 879 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 +MIK+FR Sbjct: 567 MMIKIFR 573>XP_006714105 Length = 897 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 +MIK+FR Sbjct: 585 MMIKIFR 591>XP_005265805 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 +MIK+FR Sbjct: 600 MMIKIFR 606>XP_005265804 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 +MIK+FR Sbjct: 600 MMIKIFR 606>XP_005265374 Length = 503 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLIMIKLF 8 FL+ +KLF Sbjct: 492 FLVPLKLF 499>XP_005270439 Length = 405 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLIMIKLF 8 FLI+ K+F Sbjct: 259 FLILAKMF 266>XP_005270438 Length = 635 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLIMIKLF 8 FLI+ K+F Sbjct: 259 FLILAKMF 266>NP_060731 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 IMIKLFR 9 +MIK+FR Sbjct: 582 MMIKIFR 588Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.372 0.180 0.511 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 267,529 Number of extensions: 276 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |