Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001257436 20 390 NP_001257437 20 390 NP_006281 20 390 XP_006715618 20 390 XP_005267176 20 390 NP_002829 16 5631 XP_006711535 16 5631 NP_001034553 16 7355 NP_001244068 16 7355 NP_001099003 16 7355 NP_150229 16 7355 NP_079189 16 7355 NP_004061 16 7355 XP_006710134 16 7355 NP_001036169 16 7355 NP_054706 15 9605 NP_003364 15 9605 NP_387450 15 9605 NP_004352 15 9605 NP_078966 15 9605 XP_005270200 15 9605 XP_005270199 15 9605>NP_001257436 Length = 790 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FLFSETTTM 9 FLFSETT M Sbjct: 468 FLFSETTAM 476>NP_001257437 Length = 790 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FLFSETTTM 9 FLFSETT M Sbjct: 468 FLFSETTAM 476>NP_006281 Length = 790 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FLFSETTTM 9 FLFSETT M Sbjct: 468 FLFSETTAM 476>XP_006715618 Length = 577 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FLFSETTTM 9 FLFSETT M Sbjct: 255 FLFSETTAM 263>XP_005267176 Length = 790 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FLFSETTTM 9 FLFSETT M Sbjct: 468 FLFSETTAM 476>NP_002829 Length = 1306 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FSETTT 8 FSETTT Sbjct: 69 FSETTT 74>XP_006711535 Length = 1258 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 FSETTT 8 FSETTT Sbjct: 69 FSETTT 74>NP_001034553 Length = 1323 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LFSETTTM 9 LFS+T+T+ Sbjct: 344 LFSDTSTL 351>NP_001244068 Length = 644 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LFSETT 7 LFSETT Sbjct: 592 LFSETT 597>NP_001099003 Length = 783 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LFSETTTM 9 +FSET+T+ Sbjct: 340 VFSETSTL 347>NP_150229 Length = 1359 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FLFSETTTM 9 F+F++TT M Sbjct: 871 FVFTKTTLM 879>NP_079189 Length = 1026 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LFSETTTM 9 +FSET+T+ Sbjct: 340 VFSETSTL 347>NP_004061 Length = 687 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LFSETT 7 LFSETT Sbjct: 635 LFSETT 640>XP_006710134 Length = 326 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LFSETT 7 LFSETT Sbjct: 282 LFSETT 287>NP_001036169 Length = 686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 LFSETT 7 LFSETT Sbjct: 634 LFSETT 639>NP_054706 Length = 1134 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LFSETTT 8 +FS+TTT Sbjct: 598 VFSDTTT 604>NP_003364 Length = 1066 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LFSETTT 8 +FS+TTT Sbjct: 598 VFSDTTT 604>NP_387450 Length = 785 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FSETTTM 9 FS+TTT+ Sbjct: 358 FSDTTTV 364>NP_004352 Length = 785 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FSETTTM 9 FS+TTT+ Sbjct: 358 FSDTTTV 364>NP_078966 Length = 14507 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FLFSETTTM 9 F +SE TT+ Sbjct: 4129 FTYSEKTTL 4137>XP_005270200 Length = 1067 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LFSETTT 8 +FS+TTT Sbjct: 599 VFSDTTT 605>XP_005270199 Length = 1135 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LFSETTT 8 +FS+TTT Sbjct: 599 VFSDTTT 605Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.129 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 412,169 Number of extensions: 679 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |