Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 18 1482 NP_001276018 17 4312 NP_079048 17 4312 NP_001276019 17 4312 NP_001276017 17 4312 NP_001276020 17 4312 XP_005271279 17 4312 XP_005271277 17 4312 XP_005271276 17 4312 XP_005271275 17 4312 XP_005271273 17 4312 NP_954868 16 5631 NP_954869 16 5631 NP_001277153 16 5631 NP_954870 16 5631 NP_954863 16 5631 NP_001229759 16 7355 NP_068586 16 7355 NP_001229757 16 7355 XP_005249324 16 7355 XP_005249323 16 7355 NP_612480 16 7355>NP_115803 Length = 1156 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FLDIKIIRV 9 FLDIK IRV Sbjct: 200 FLDIKRIRV 208>NP_001276018 Length = 1123 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 730 FLDLSIIR 737>NP_079048 Length = 1142 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 749 FLDLSIIR 756>NP_001276019 Length = 1142 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 749 FLDLSIIR 756>NP_001276017 Length = 1142 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 749 FLDLSIIR 756>NP_001276020 Length = 782 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 389 FLDLSIIR 396>XP_005271279 Length = 782 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 389 FLDLSIIR 396>XP_005271277 Length = 951 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 558 FLDLSIIR 565>XP_005271276 Length = 1067 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 674 FLDLSIIR 681>XP_005271275 Length = 1067 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 674 FLDLSIIR 681>XP_005271273 Length = 1130 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 FLD+ IIR Sbjct: 737 FLDLSIIR 744>NP_954868 Length = 533 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 F DIK++R Sbjct: 160 FFDIKLLR 167>NP_954869 Length = 513 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 F DIK++R Sbjct: 140 FFDIKLLR 147>NP_001277153 Length = 413 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 F DIK++R Sbjct: 40 FFDIKLLR 47>NP_954870 Length = 551 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 F DIK++R Sbjct: 178 FFDIKLLR 185>NP_954863 Length = 522 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FLDIKIIR 8 F DIK++R Sbjct: 160 FFDIKLLR 167>NP_001229759 Length = 262 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DIKIIRV 9 D+KIIRV Sbjct: 106 DMKIIRV 112>NP_068586 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DIKIIRV 9 D+KIIRV Sbjct: 106 DMKIIRV 112>NP_001229757 Length = 326 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DIKIIRV 9 D+KIIRV Sbjct: 133 DMKIIRV 139>XP_005249324 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DIKIIRV 9 D+KIIRV Sbjct: 106 DMKIIRV 112>XP_005249323 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 DIKIIRV 9 D+KIIRV Sbjct: 106 DMKIIRV 112>NP_612480 Length = 381 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LDIKIIRV 9 LD+++IRV Sbjct: 321 LDLQVIRV 328Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.353 0.174 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 406,204 Number of extensions: 572 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |