Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 20 509 NP_001075109 20 509 NP_006222 18 1482 NP_056162 17 3301 NP_004501 17 4312 NP_001004106 17 4312 NP_004500 17 4312 NP_001004105 17 4312 NP_536349 17 4312 NP_002073 17 4312 NP_001171944 17 4312 NP_001070254 17 4312 XP_006718388 17 4312 XP_006718387 17 4312 XP_006718386 17 4312 XP_006714923 17 4312 XP_006714922 17 4312 XP_006714921 17 4312 XP_006712552 17 4312 XP_006712551 17 4312 XP_006712550 17 4312 XP_006712549 17 4312 XP_005246582 17 4312 NP_071325 16 7355 NP_998778 16 7355 XP_006713920 16 7355 XP_006713919 16 7355>NP_008835 Length = 4128 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FKRLGASVA 9 FKRLGAS+A Sbjct: 1073 FKRLGASLA 1081>NP_001075109 Length = 4097 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FKRLGASVA 9 FKRLGAS+A Sbjct: 1073 FKRLGASLA 1081>NP_006222 Length = 2286 Score = 18.1 bits (35), Expect = 1482 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 1 FKRLGASV 8 FKRLG+SV Sbjct: 1856 FKRLGSSV 1863>NP_056162 Length = 1052 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 FKRLGASV 8 FKR GASV Sbjct: 715 FKRRGASV 722>NP_004501 Length = 549 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 103 FKRVGAS 109>NP_001004106 Length = 576 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FKRLGASV 8 FKRLGA + Sbjct: 453 FKRLGAGM 460>NP_004500 Length = 689 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 103 FKRVGAS 109>NP_001004105 Length = 560 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FKRLGASV 8 FKRLGA + Sbjct: 453 FKRLGAGM 460>NP_536349 Length = 713 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 103 FKRVGAS 109>NP_002073 Length = 589 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FKRLGASV 8 FKRLGA + Sbjct: 453 FKRLGAGM 460>NP_001171944 Length = 555 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 109 FKRVGAS 115>NP_001070254 Length = 1735 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FKRLGASV 8 F+RLG+SV Sbjct: 115 FERLGSSV 122>XP_006718388 Length = 1331 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FKRLGASV 8 F+RLG+SV Sbjct: 178 FERLGSSV 185>XP_006718387 Length = 1798 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FKRLGASV 8 F+RLG+SV Sbjct: 178 FERLGSSV 185>XP_006718386 Length = 1822 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FKRLGASV 8 F+RLG+SV Sbjct: 178 FERLGSSV 185>XP_006714923 Length = 324 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FKRLGASV 8 FKRLGA + Sbjct: 188 FKRLGAGM 195>XP_006714922 Length = 557 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FKRLGASV 8 FKRLGA + Sbjct: 421 FKRLGAGM 428>XP_006714921 Length = 559 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FKRLGASV 8 FKRLGA + Sbjct: 423 FKRLGAGM 430>XP_006712552 Length = 648 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 109 FKRVGAS 115>XP_006712551 Length = 669 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 109 FKRVGAS 115>XP_006712550 Length = 695 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 109 FKRVGAS 115>XP_006712549 Length = 713 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 103 FKRVGAS 109>XP_005246582 Length = 719 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FKRLGAS 7 FKR+GAS Sbjct: 109 FKRVGAS 115>NP_071325 Length = 701 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KRLGASVA 9 KR G+SVA Sbjct: 313 KRFGSSVA 320>NP_998778 Length = 701 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KRLGASVA 9 KR G+SVA Sbjct: 313 KRFGSSVA 320>XP_006713920 Length = 701 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KRLGASVA 9 KR G+SVA Sbjct: 313 KRFGSSVA 320>XP_006713919 Length = 701 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KRLGASVA 9 KR G+SVA Sbjct: 313 KRFGSSVA 320Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.136 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 384,787 Number of extensions: 475 Number of successful extensions: 27 Number of sequences better than 10000.0: 27 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 27 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |