Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000258 18 1482 NP_001035957 18 1482 XP_006721991 18 1482 XP_006721990 18 1482 XP_006721989 18 1482 XP_005258041 18 1482 XP_006721988 18 1482 XP_006721987 18 1482 XP_006721986 18 1482 XP_005258040 18 1482 XP_006721985 18 1482 NP_203744 16 7355 XP_005276506 16 7355 XP_006724408 16 7355 XP_005261849 16 7355 XP_005261848 16 7355 XP_006720412 16 7355 NP_001275514 15 9605 NP_741982 15 9605 NP_116246 15 9605 XP_005254200 15 9605 NP_001005326 15 9605>NP_000258 Length = 2818 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1563 FKALKTLSI 1571>NP_001035957 Length = 2839 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1584 FKALKTLSI 1592>XP_006721991 Length = 1632 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1594 FKALKTLSI 1602>XP_006721990 Length = 2823 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1594 FKALKTLSI 1602>XP_006721989 Length = 2823 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1594 FKALKTLSI 1602>XP_005258041 Length = 2836 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1563 FKALKTLSI 1571>XP_006721988 Length = 2846 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1573 FKALKTLSI 1581>XP_006721987 Length = 2849 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1594 FKALKTLSI 1602>XP_006721986 Length = 2854 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1581 FKALKTLSI 1589>XP_005258040 Length = 2857 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1584 FKALKTLSI 1592>XP_006721985 Length = 2867 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FKALKMLSI 9 FKALK LSI Sbjct: 1594 FKALKTLSI 1602>NP_203744 Length = 863 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FKALKMLSI 9 FK +KML + Sbjct: 839 FKTMKMLKL 847>XP_005276506 Length = 151 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KALKMLSI 9 KALK LSI Sbjct: 109 KALKTLSI 116>XP_006724408 Length = 788 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FKALKMLSI 9 FK +KML + Sbjct: 764 FKTMKMLKL 772>XP_005261849 Length = 870 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FKALKMLSI 9 FK +KML + Sbjct: 846 FKTMKMLKL 854>XP_005261848 Length = 872 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FKALKMLSI 9 FK +KML + Sbjct: 848 FKTMKMLKL 856>XP_006720412 Length = 128 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 KALKMLSI 9 KALK LSI Sbjct: 86 KALKTLSI 93>NP_001275514 Length = 332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 FKALKML 7 +KALKM+ Sbjct: 236 YKALKMM 242>NP_741982 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 FKALKML 7 +KALKM+ Sbjct: 236 YKALKMM 242>NP_116246 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 FKALKML 7 +KALKM+ Sbjct: 236 YKALKMM 242>XP_005254200 Length = 374 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 FKALKML 7 +KALKM+ Sbjct: 236 YKALKMM 242>NP_001005326 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 FKALKMLS 8 FKA MLS Sbjct: 234 FKAFSMLS 241Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.144 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 234,127 Number of extensions: 213 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |