Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245200 19 665 NP_000240 19 665 XP_005265218 19 665 XP_006724177 17 3301 NP_000762 16 5631 NP_056496 16 7355 XP_005256667 16 7355 XP_005256666 16 7355 XP_005256665 16 7355 XP_005256664 16 7355 XP_005256662 16 7355 NP_001073991 15 9605 NP_892006 15 9605 NP_149062 15 9605 NP_056327 15 9605 NP_056140 15 9605 XP_006717169 15 9605 XP_006715488 15 9605 XP_006715487 15 9605 XP_006715486 15 9605 XP_006715485 15 9605 XP_006715484 15 9605 XP_006715483 15 9605 XP_006715482 15 9605 XP_006715481 15 9605 XP_006715480 15 9605 XP_006715479 15 9605 XP_006715478 15 9605 XP_006715477 15 9605 XP_006715476 15 9605 XP_006715475 15 9605 XP_006715474 15 9605 XP_006715473 15 9605 XP_006715472 15 9605 XP_006715471 15 9605 XP_006715470 15 9605 XP_005248236 15 9605 XP_005248234 15 9605 XP_006713163 15 9605 NP_001001676 15 9605>NP_001245200 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FITSKLQSF 9 F TSKLQSF Sbjct: 80 FTTSKLQSF 88>NP_000240 Length = 756 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FITSKLQSF 9 F TSKLQSF Sbjct: 80 FTTSKLQSF 88>XP_005265218 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FITSKLQSF 9 F TSKLQSF Sbjct: 80 FTTSKLQSF 88>XP_006724177 Length = 383 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 FITSKLQSF 9 F+TS+++SF Sbjct: 42 FLTSRIRSF 50>NP_000762 Length = 490 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FITSKLQSF 9 F+TS LQ+F Sbjct: 448 FLTSILQNF 456>NP_056496 Length = 204 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TSKLQSF 9 TSKLQ F Sbjct: 127 TSKLQKF 133>XP_005256667 Length = 142 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TSKLQSF 9 TSKLQ F Sbjct: 127 TSKLQKF 133>XP_005256666 Length = 153 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TSKLQSF 9 TSKLQ F Sbjct: 127 TSKLQKF 133>XP_005256665 Length = 155 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TSKLQSF 9 TSKLQ F Sbjct: 127 TSKLQKF 133>XP_005256664 Length = 161 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TSKLQSF 9 TSKLQ F Sbjct: 127 TSKLQKF 133>XP_005256662 Length = 186 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 TSKLQSF 9 TSKLQ F Sbjct: 127 TSKLQKF 133>NP_001073991 Length = 1620 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FITSKLQS 8 F+T KLQ+ Sbjct: 449 FLTDKLQA 456>NP_892006 Length = 8797 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7449 SKLQSF 7454>NP_149062 Length = 8749 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7378 SKLQSF 7383>NP_056327 Length = 4265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FITSKLQSF 9 F+T LQ+F Sbjct: 4123 FLTGTLQNF 4131>NP_056140 Length = 2266 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FITSKLQSF 9 ++TS LQ F Sbjct: 1151 YLTSALQDF 1159>XP_006717169 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FITSKLQSF 9 FIT LQ+F Sbjct: 119 FITFHLQNF 127>XP_006715488 Length = 8721 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7461 SKLQSF 7466>XP_006715487 Length = 8744 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7461 SKLQSF 7466>XP_006715486 Length = 8758 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7461 SKLQSF 7466>XP_006715485 Length = 8793 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7408 SKLQSF 7413>XP_006715484 Length = 8794 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7409 SKLQSF 7414>XP_006715483 Length = 8795 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7410 SKLQSF 7415>XP_006715482 Length = 8797 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7449 SKLQSF 7454>XP_006715481 Length = 8799 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7414 SKLQSF 7419>XP_006715480 Length = 8799 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7414 SKLQSF 7419>XP_006715479 Length = 8804 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7456 SKLQSF 7461>XP_006715478 Length = 8809 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7461 SKLQSF 7466>XP_006715477 Length = 8822 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7437 SKLQSF 7442>XP_006715476 Length = 8823 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7461 SKLQSF 7466>XP_006715475 Length = 8827 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7456 SKLQSF 7461>XP_006715474 Length = 8829 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7444 SKLQSF 7449>XP_006715473 Length = 8832 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7461 SKLQSF 7466>XP_006715472 Length = 8839 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7454 SKLQSF 7459>XP_006715471 Length = 8842 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7457 SKLQSF 7462>XP_006715470 Length = 8846 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 SKLQSF 9 SKLQSF Sbjct: 7461 SKLQSF 7466>XP_005248236 Length = 1262 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FITSKLQS 8 F+T KLQ+ Sbjct: 449 FLTDKLQA 456>XP_005248234 Length = 1620 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FITSKLQS 8 F+T KLQ+ Sbjct: 449 FLTDKLQA 456>XP_006713163 Length = 4265 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FITSKLQSF 9 F+T LQ+F Sbjct: 4123 FLTGTLQNF 4131>NP_001001676 Length = 176 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FITSKLQSF 9 FIT LQ+F Sbjct: 119 FITFHLQNF 127Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.333 0.137 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 319,036 Number of extensions: 406 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |