Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 20 390 NP_001087241 20 390 XP_006714101 20 390 XP_005265799 20 390 XP_005265798 20 390 XP_005265797 20 390 NP_001124463 17 3301 NP_006380 17 3301 XP_005271451 17 3301 XP_005271450 17 3301 XP_005271449 17 3301 XP_005271447 17 3301 NP_066278 17 4312 NP_001258662 17 4312 XP_006713232 17 4312 XP_006713230 17 4312 NP_001273171 16 5631 NP_001511 16 5631 XP_006721105 16 5631 NP_056224 16 7355 NP_004487 16 7355 NP_115495 15 9605 NP_003195 15 9605 NP_000731 15 9605 NP_001008537 15 9605 XP_006724709 15 9605 XP_006724708 15 9605 XP_005257472 15 9605 XP_005257470 15 9605 XP_005257469 15 9605 XP_005257468 15 9605 XP_005257467 15 9605 XP_005273091 15 9605 XP_005273090 15 9605 XP_006711795 15 9605 XP_005273089 15 9605>NP_000213 Length = 976 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FGSANVTT 8 FGSANVTT Sbjct: 296 FGSANVTT 303>NP_001087241 Length = 972 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FGSANVTT 8 FGSANVTT Sbjct: 296 FGSANVTT 303>XP_006714101 Length = 526 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FGSANVTT 8 FGSANVTT Sbjct: 297 FGSANVTT 304>XP_005265799 Length = 973 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FGSANVTT 8 FGSANVTT Sbjct: 297 FGSANVTT 304>XP_005265798 Length = 976 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FGSANVTT 8 FGSANVTT Sbjct: 297 FGSANVTT 304>XP_005265797 Length = 977 Score = 20.0 bits (40), Expect = 390 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 FGSANVTT 8 FGSANVTT Sbjct: 297 FGSANVTT 304>NP_001124463 Length = 999 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FGSANVTT 8 FGS N+TT Sbjct: 511 FGSQNLTT 518>NP_006380 Length = 999 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FGSANVTT 8 FGS N+TT Sbjct: 511 FGSQNLTT 518>XP_005271451 Length = 1000 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FGSANVTT 8 FGS N+TT Sbjct: 511 FGSQNLTT 518>XP_005271450 Length = 1000 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FGSANVTT 8 FGS N+TT Sbjct: 511 FGSQNLTT 518>XP_005271449 Length = 1000 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FGSANVTT 8 FGS N+TT Sbjct: 511 FGSQNLTT 518>XP_005271447 Length = 1000 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FGSANVTT 8 FGS N+TT Sbjct: 511 FGSQNLTT 518>NP_066278 Length = 725 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GSANVTTA 9 G+AN TTA Sbjct: 307 GTANTTTA 314>NP_001258662 Length = 689 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GSANVTTA 9 G+AN TTA Sbjct: 263 GTANTTTA 270>XP_006713232 Length = 519 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GSANVTTA 9 G+AN TTA Sbjct: 307 GTANTTTA 314>XP_006713230 Length = 655 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GSANVTTA 9 G+AN TTA Sbjct: 307 GTANTTTA 314>NP_001273171 Length = 2084 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FGSANVTTA 9 FG+AN++ A Sbjct: 1938 FGAANISQA 1946>NP_001511 Length = 2109 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FGSANVTTA 9 FG+AN++ A Sbjct: 1963 FGAANISQA 1971>XP_006721105 Length = 2046 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FGSANVTTA 9 FG+AN++ A Sbjct: 1900 FGAANISQA 1908>NP_056224 Length = 3123 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GSANVTTA 9 GSA VTT+ Sbjct: 1035 GSARVTTS 1042>NP_004487 Length = 472 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GSANVTT 8 GSA+VTT Sbjct: 440 GSASVTT 446>NP_115495 Length = 6306 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 FGSANVT 7 +G+AN+T Sbjct: 5612 YGTANIT 5618>NP_003195 Length = 772 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 FGSANVT 7 FGS N+T Sbjct: 408 FGSTNLT 414>NP_000731 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FGSANVTTA 9 FGS NV+ A Sbjct: 37 FGSYNVSRA 45>NP_001008537 Length = 1516 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SANVTT 8 SANVTT Sbjct: 800 SANVTT 805>XP_006724709 Length = 1486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SANVTT 8 SANVTT Sbjct: 800 SANVTT 805>XP_006724708 Length = 1486 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SANVTT 8 SANVTT Sbjct: 800 SANVTT 805>XP_005257472 Length = 731 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 FGSANVT 7 FGS N+T Sbjct: 367 FGSTNLT 373>XP_005257470 Length = 742 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 FGSANVT 7 FGS N+T Sbjct: 378 FGSTNLT 384>XP_005257469 Length = 742 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 FGSANVT 7 FGS N+T Sbjct: 378 FGSTNLT 384>XP_005257468 Length = 761 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 FGSANVT 7 FGS N+T Sbjct: 397 FGSTNLT 403>XP_005257467 Length = 772 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 FGSANVT 7 FGS N+T Sbjct: 408 FGSTNLT 414>XP_005273091 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FGSANVTTA 9 FGS NV+ A Sbjct: 37 FGSYNVSRA 45>XP_005273090 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FGSANVTTA 9 FGS NV+ A Sbjct: 37 FGSYNVSRA 45>XP_006711795 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FGSANVTTA 9 FGS NV+ A Sbjct: 37 FGSYNVSRA 45>XP_005273089 Length = 590 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FGSANVTTA 9 FGS NV+ A Sbjct: 37 FGSYNVSRA 45Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.309 0.115 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 337,003 Number of extensions: 531 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |