Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001257436 19 665 NP_001257437 19 665 NP_006281 19 665 XP_006715618 19 665 XP_005267176 19 665 NP_056161 17 3301 XP_006720156 17 3301 NP_443076 16 5631 NP_690051 16 5631 NP_006038 16 5631 NP_001185769 16 5631 NP_001185767 16 5631 NP_068772 15 9605 NP_001230018 15 9605 NP_973732 15 9605 NP_973731 15 9605 NP_001230017 15 9605 NP_000279 15 9605 NP_115495 15 9605 NP_005384 15 9605 NP_054825 15 9605 NP_001156729 15 9605 XP_005253733 15 9605 XP_005267076 15 9605>NP_001257436 Length = 790 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FASASGKVS 9 FA+ASGKVS Sbjct: 637 FAAASGKVS 645>NP_001257437 Length = 790 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FASASGKVS 9 FA+ASGKVS Sbjct: 637 FAAASGKVS 645>NP_006281 Length = 790 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FASASGKVS 9 FA+ASGKVS Sbjct: 637 FAAASGKVS 645>XP_006715618 Length = 577 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FASASGKVS 9 FA+ASGKVS Sbjct: 424 FAAASGKVS 432>XP_005267176 Length = 790 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 FASASGKVS 9 FA+ASGKVS Sbjct: 637 FAAASGKVS 645>NP_056161 Length = 2539 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 ASASGKVS 9 A+ASGKVS Sbjct: 290 ATASGKVS 297>XP_006720156 Length = 2497 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 ASASGKVS 9 A+ASGKVS Sbjct: 290 ATASGKVS 297>NP_443076 Length = 536 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FASASGK 7 FA+ASGK Sbjct: 451 FAAASGK 457>NP_690051 Length = 932 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FASASGK 7 FAS+SGK Sbjct: 846 FASSSGK 852>NP_006038 Length = 932 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FASASGK 7 FAS+SGK Sbjct: 846 FASSSGK 852>NP_001185769 Length = 932 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FASASGK 7 FAS+SGK Sbjct: 846 FASSSGK 852>NP_001185767 Length = 932 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 FASASGK 7 FAS+SGK Sbjct: 846 FASSSGK 852>NP_068772 Length = 763 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASGKVS 9 SA+GKVS Sbjct: 300 SANGKVS 306>NP_001230018 Length = 747 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASGKVS 9 SA+GKVS Sbjct: 299 SANGKVS 305>NP_973732 Length = 748 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASGKVS 9 SA+GKVS Sbjct: 300 SANGKVS 306>NP_973731 Length = 801 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASGKVS 9 SA+GKVS Sbjct: 300 SANGKVS 306>NP_001230017 Length = 748 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASGKVS 9 SA+GKVS Sbjct: 299 SANGKVS 305>NP_000279 Length = 323 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 FASASG 6 FASASG Sbjct: 171 FASASG 176>NP_115495 Length = 6306 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FASASGKVS 9 FA+ASG ++ Sbjct: 1627 FANASGTIT 1635>NP_005384 Length = 1909 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 FASASG 6 FASASG Sbjct: 1133 FASASG 1138>NP_054825 Length = 691 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FASASGKV 8 FA+ SGK+ Sbjct: 315 FAARSGKI 322>NP_001156729 Length = 1932 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 FASASG 6 FASASG Sbjct: 1156 FASASG 1161>XP_005253733 Length = 764 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SASGKVS 9 SA+GKVS Sbjct: 300 SANGKVS 306>XP_005267076 Length = 285 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 FASASG 6 FASASG Sbjct: 133 FASASG 138Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.110 0.267 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 446,165 Number of extensions: 499 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |