Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005091 18 1135 NP_653080 18 1135 XP_005267292 18 1135 XP_005267291 18 1135 XP_005267290 18 1135 NP_002801 16 5631 XP_006711527 16 5631 XP_005245411 16 5631 NP_001035194 16 5631 NP_057366 16 7355 NP_001186781 16 7355 NP_001186785 16 7355 NP_001186782 16 7355 NP_001186784 16 7355 NP_056234 15 9605 XP_005274542 15 9605>NP_005091 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV SEKLTA Sbjct: 344 EVASEKLTA 352>NP_653080 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV SEKLTA Sbjct: 246 EVASEKLTA 254>XP_005267292 Length = 1677 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV SEKLTA Sbjct: 239 EVASEKLTA 247>XP_005267291 Length = 1684 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV SEKLTA Sbjct: 246 EVASEKLTA 254>XP_005267290 Length = 1782 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV SEKLTA Sbjct: 344 EVASEKLTA 352>NP_002801 Length = 377 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV +EKLTA Sbjct: 147 EVNTEKLTA 155>XP_006711527 Length = 333 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV +EKLTA Sbjct: 100 EVNTEKLTA 108>XP_005245411 Length = 380 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV +EKLTA Sbjct: 147 EVNTEKLTA 155>NP_001035194 Length = 4493 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 EVVSEKLT 8 EVV EK+T Sbjct: 4270 EVVKEKIT 4277>NP_057366 Length = 227 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV+ ++LTA Sbjct: 119 EVIKQRLTA 127>NP_001186781 Length = 187 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV+ ++LTA Sbjct: 79 EVIKQRLTA 87>NP_001186785 Length = 157 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV+ ++LTA Sbjct: 49 EVIKQRLTA 57>NP_001186782 Length = 157 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV+ ++LTA Sbjct: 49 EVIKQRLTA 57>NP_001186784 Length = 157 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 EVVSEKLTA 9 EV+ ++LTA Sbjct: 49 EVIKQRLTA 57>NP_056234 Length = 2828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSEKLTA 9 +SEK+TA Sbjct: 2548 ISEKITA 2554>XP_005274542 Length = 2853 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSEKLTA 9 +SEK+TA Sbjct: 2573 ISEKITA 2579Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.294 0.111 0.240 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 368,832 Number of extensions: 393 Number of successful extensions: 16 Number of sequences better than 10000.0: 16 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 16 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |