Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245200 19 665 NP_000240 19 665 XP_005265218 19 665 NP_001164100 15 9605 NP_065971 15 9605 NP_001276988 15 9605 NP_001025181 15 9605 NP_001154945 15 9605 NP_000685 15 9605 NP_055592 15 9605 NP_056445 15 9605 NP_055590 15 9605 NP_001007468 15 9605 NP_001245256 15 9605 NP_001245255 15 9605 NP_001245254 15 9605 NP_002724 15 9605 NP_001026786 15 9605 NP_001193639 15 9605 XP_006724453 15 9605 XP_005261930 15 9605 XP_006724452 15 9605 XP_005261929 15 9605 XP_005261928 15 9605 XP_005261927 15 9605 XP_006724451 15 9605 XP_005261926 15 9605 XP_005261925 15 9605 XP_005269077 15 9605 XP_006719563 15 9605 XP_006719562 15 9605 XP_005269076 15 9605 XP_006712474 15 9605 XP_005273417 15 9605 NP_001193638 15 9605 NP_000686 15 9605>NP_001245200 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ETVLNRIAA 9 ETV+NRIAA Sbjct: 13 ETVVNRIAA 21>NP_000240 Length = 756 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ETVLNRIAA 9 ETV+NRIAA Sbjct: 13 ETVVNRIAA 21>XP_005265218 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ETVLNRIAA 9 ETV+NRIAA Sbjct: 13 ETVVNRIAA 21>NP_001164100 Length = 2581 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 ETVLNRI 7 ETV NR+ Sbjct: 2399 ETVFNRV 2405>NP_065971 Length = 2302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 ETVLNRI 7 ETV NR+ Sbjct: 2120 ETVFNRV 2126>NP_001276988 Length = 272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ETVLNRIA 8 +TV NR+A Sbjct: 30 QTVANRVA 37>NP_001025181 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ETVLNRIA 8 +TV NR+A Sbjct: 189 QTVANRVA 196>NP_001154945 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ETVLNRIA 8 +TV NR+A Sbjct: 226 QTVANRVA 233>NP_000685 Length = 468 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ETVLNRIA 8 +TV NR+A Sbjct: 226 QTVANRVA 233>NP_055592 Length = 1524 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 +TVLNR+ Sbjct: 279 DTVLNRL 285>NP_056445 Length = 807 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET+LNR+ Sbjct: 122 ETLLNRL 128>NP_055590 Length = 1211 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 928 LLNRIAA 934>NP_001007468 Length = 1242 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 959 LLNRIAA 965>NP_001245256 Length = 1148 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 865 LLNRIAA 871>NP_001245255 Length = 1160 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 877 LLNRIAA 883>NP_001245254 Length = 1187 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 904 LLNRIAA 910>NP_002724 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET++NR+ Sbjct: 286 ETIINRL 292>NP_001026786 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ETVLNRIA 8 +TV NR+A Sbjct: 145 QTVANRVA 152>NP_001193639 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET++NR+ Sbjct: 254 ETIINRL 260>XP_006724453 Length = 1160 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 877 LLNRIAA 883>XP_005261930 Length = 1189 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 877 LLNRIAA 883>XP_006724452 Length = 1189 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 877 LLNRIAA 883>XP_005261929 Length = 1240 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 928 LLNRIAA 934>XP_005261928 Length = 1247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 935 LLNRIAA 941>XP_005261927 Length = 1247 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 935 LLNRIAA 941>XP_006724451 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 959 LLNRIAA 965>XP_005261926 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 959 LLNRIAA 965>XP_005261925 Length = 1271 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VLNRIAA 9 +LNRIAA Sbjct: 959 LLNRIAA 965>XP_005269077 Length = 247 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET++NR+ Sbjct: 202 ETIINRL 208>XP_006719563 Length = 280 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET++NR+ Sbjct: 235 ETIINRL 241>XP_006719562 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET++NR+ Sbjct: 254 ETIINRL 260>XP_005269076 Length = 368 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET++NR+ Sbjct: 323 ETIINRL 329>XP_006712474 Length = 689 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET+LNR+ Sbjct: 6 ETLLNRL 12>XP_005273417 Length = 1487 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 +TVLNR+ Sbjct: 279 DTVLNRL 285>NP_001193638 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 ETVLNRI 7 ET++NR+ Sbjct: 295 ETIINRL 301>NP_000686 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ETVLNRIA 8 +TV NR+A Sbjct: 145 QTVANRVA 152Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.127 0.304 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 293,509 Number of extensions: 459 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |