Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004000 18 1935 NP_004001 18 1935 NP_003997 18 1935 NP_000100 18 1935 XP_006724538 18 1935 XP_006724537 18 1935 XP_006724536 18 1935 XP_006724535 18 1935 XP_006724534 18 1935 XP_006724533 18 1935 XP_006724532 18 1935 XP_006724531 18 1935 NP_064627 16 5631 XP_006713328 16 5631 XP_006713327 16 5631 XP_006713326 16 5631 XP_006713325 16 5631 XP_006713324 16 5631 XP_005265385 16 5631 NP_997191 16 7355 NP_001152956 16 7355 XP_006711682 16 7355 XP_006711061 16 7355 XP_006711060 16 7355 XP_005244868 16 7355 XP_003119848 16 7355 NP_954657 15 9605 NP_000215 15 9605 NP_001170991 15 9605 NP_001120973 15 9605 NP_000469 15 9605 XP_005245875 15 9605 XP_006710609 15 9605>NP_004000 Length = 3681 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 679 ETVTTVTTR 687>NP_004001 Length = 3562 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 560 ETVTTVTTR 568>NP_003997 Length = 3685 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 683 ETVTTVTTR 691>NP_000100 Length = 3677 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 675 ETVTTVTTR 683>XP_006724538 Length = 3575 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 683 ETVTTVTTR 691>XP_006724537 Length = 3593 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 683 ETVTTVTTR 691>XP_006724536 Length = 3657 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 683 ETVTTVTTR 691>XP_006724535 Length = 3660 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 640 ETVTTVTTR 648>XP_006724534 Length = 3668 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 683 ETVTTVTTR 691>XP_006724533 Length = 3690 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 683 ETVTTVTTR 691>XP_006724532 Length = 3695 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 675 ETVTTVTTR 683>XP_006724531 Length = 3703 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+T +TTR Sbjct: 683 ETVTTVTTR 691>NP_064627 Length = 1388 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ETLTVITT 8 ETL +ITT Sbjct: 654 ETLKIITT 661>XP_006713328 Length = 992 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ETLTVITT 8 ETL +ITT Sbjct: 654 ETLKIITT 661>XP_006713327 Length = 1023 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ETLTVITT 8 ETL +ITT Sbjct: 289 ETLKIITT 296>XP_006713326 Length = 1037 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ETLTVITT 8 ETL +ITT Sbjct: 654 ETLKIITT 661>XP_006713325 Length = 1195 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ETLTVITT 8 ETL +ITT Sbjct: 654 ETLKIITT 661>XP_006713324 Length = 1285 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ETLTVITT 8 ETL +ITT Sbjct: 654 ETLKIITT 661>XP_005265385 Length = 1291 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ETLTVITT 8 ETL +ITT Sbjct: 557 ETLKIITT 564>NP_997191 Length = 1888 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+ ++TT+ Sbjct: 503 ETVVIVTTK 511>NP_001152956 Length = 1736 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+ ++TT+ Sbjct: 503 ETVVIVTTK 511>XP_006711682 Length = 1739 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 ET+ ++TT+ Sbjct: 354 ETVVIVTTK 362>XP_006711061 Length = 1553 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ETLTVITTR 9 ETL +IT R Sbjct: 1233 ETLDIITKR 1241>XP_006711060 Length = 1595 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ETLTVITTR 9 ETL +IT R Sbjct: 1275 ETLDIITKR 1283>XP_005244868 Length = 1639 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ETLTVITTR 9 ETL +IT R Sbjct: 1319 ETLDIITKR 1327>XP_003119848 Length = 515 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ETLTVITTR 9 ETL +IT R Sbjct: 195 ETLDIITKR 203>NP_954657 Length = 430 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 E+ TV+TT+ Sbjct: 277 ESTTVVTTQ 285>NP_000215 Length = 430 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ETLTVITTR 9 E+ TV+TT+ Sbjct: 277 ESTTVVTTQ 285>NP_001170991 Length = 447 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETLTVIT 7 +TLTV+T Sbjct: 293 DTLTVVT 299>NP_001120973 Length = 469 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETLTVIT 7 +TLTV+T Sbjct: 315 DTLTVVT 321>NP_000469 Length = 524 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETLTVIT 7 +TLTV+T Sbjct: 370 DTLTVVT 376>XP_005245875 Length = 524 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETLTVIT 7 +TLTV+T Sbjct: 370 DTLTVVT 376>XP_006710609 Length = 524 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ETLTVIT 7 +TLTV+T Sbjct: 370 DTLTVVT 376Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.315 0.124 0.298 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 305,327 Number of extensions: 365 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |